View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_low_14 (Length: 245)
Name: NF14668_low_14
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35293396 - 35293642
Alignment:
| Q |
1 |
acatcaattgaacatgatgaatggatataaaggacttttgatcgaataaacttcctttggtagaacataatgaatggatatgaaggacttttggagtccc |
100 |
Q |
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| T |
35293396 |
acatcaattgaacatgatgaatggatataaaggacttttgatcgaataaacttcctttggtagaacataatgaatggatatgaaggacttttggagtccc |
35293495 |
T |
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| Q |
101 |
catac---------------------aaaattagctatgtattggtggtattaccttttcctatcagttagagaaacatgtgggcttcaacttatagata |
179 |
Q |
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| T |
35293496 |
catacaaatttagtatcctacattgtaaatttagctatgtattggtggtattaccttttcctatcagttagagaaacatgtgggcttcaacttatagata |
35293595 |
T |
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| Q |
180 |
atacatgcatcatgcatttgaactagtgacctggaaaaggaccagga |
226 |
Q |
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| T |
35293596 |
atacatgcatcatgcatttgaactagtgacctagaaaaggtccagga |
35293642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 20717893 - 20717812
Alignment:
| Q |
145 |
agttagagaaacatgtgggcttcaacttatagataatacatgcatcatgcatttgaactagtgacctggaaaaggaccagga |
226 |
Q |
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| T |
20717893 |
agttagagaaatatgtgggattcaacttatagataggacatgcatcttgcatttgaactagtgacctagaaaaggaccagga |
20717812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 20718008 - 20717946
Alignment:
| Q |
51 |
cttcctttggtagaacataatgaatggatatgaaggacttttggagtccccatacaaaattag |
113 |
Q |
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| T |
20718008 |
cttcctttgatcgaacatgatgagtggatatgaaggacttttggagtcccaatgcaaatttag |
20717946 |
T |
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