View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14668_low_15 (Length: 239)

Name: NF14668_low_15
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14668_low_15
NF14668_low_15
[»] chr8 (2 HSPs)
chr8 (19-222)||(19729080-19729286)
chr8 (151-204)||(26187541-26187594)
[»] chr6 (5 HSPs)
chr6 (132-204)||(21395646-21395718)
chr6 (132-180)||(18131861-18131909)
chr6 (148-180)||(4303042-4303074)
chr6 (148-180)||(18133067-18133099)
chr6 (148-180)||(21535810-21535842)
[»] chr2 (2 HSPs)
chr2 (123-204)||(18955444-18955525)
chr2 (148-180)||(13218769-13218801)
[»] chr5 (5 HSPs)
chr5 (132-204)||(19934642-19934714)
chr5 (134-180)||(29526117-29526163)
chr5 (132-180)||(22950349-22950397)
chr5 (148-180)||(24150275-24150307)
chr5 (132-180)||(39701667-39701715)
[»] chr3 (7 HSPs)
chr3 (132-204)||(48637593-48637665)
chr3 (132-180)||(54994695-54994743)
chr3 (131-180)||(2386379-2386428)
chr3 (132-180)||(592587-592635)
chr3 (132-180)||(7197802-7197850)
chr3 (148-180)||(40976891-40976923)
chr3 (148-180)||(45826231-45826263)
[»] chr4 (1 HSPs)
chr4 (107-180)||(27869337-27869408)
[»] chr7 (4 HSPs)
chr7 (124-173)||(27021342-27021391)
chr7 (132-180)||(6081287-6081335)
chr7 (132-180)||(6082494-6082542)
chr7 (148-180)||(17901161-17901193)
[»] scaffold0227 (1 HSPs)
scaffold0227 (132-180)||(11162-11210)
[»] scaffold0026 (2 HSPs)
scaffold0026 (148-180)||(79623-79655)
scaffold0026 (148-180)||(80819-80851)
[»] scaffold0011 (2 HSPs)
scaffold0011 (132-180)||(205668-205716)
scaffold0011 (132-180)||(211745-211793)
[»] chr1 (6 HSPs)
chr1 (132-180)||(8089798-8089846)
chr1 (132-180)||(10582786-10582834)
chr1 (132-180)||(10583992-10584040)
chr1 (148-204)||(30038113-30038169)
chr1 (132-204)||(49122025-49122097)
chr1 (132-180)||(49122214-49122262)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 19729080 - 19729286
Alignment:
Q  19 ctgattttggtctgtttcatgacagttttgcttaagtgtgcagttttttattaggtgtgcaatttt-attat--gtgttttatgaagtcggaaagggagg 115  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||  |||||||| |||||||||||||||||    
T  19729080 ctgattttggtctgtttcatggcagttttgcttaaatgtgcagttttttattatgtgtgcaatttttattatatgtgttttacgaagtcggaaagggagg 19729179  T
Q  116 gtcatttggttatttagataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttctcggagaatcga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19729180 gtcatttggttatttagataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacccaagactcttaaatttctcggagaatcga 19729279  T
Q  216 cataatt 222  Q
    |||||||    
T  19729280 cataatt 19729286  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 26187541 - 26187594
Alignment:
Q  151 gagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttct 204  Q
    |||||||||||||| ||||||||||||||| | ||| ||| |||| ||||||||    
T  26187541 gagaccaagctctcaaattcttggaagggagagacccaaggctctcaaatttct 26187594  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 21395718 - 21395646
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttct 204  Q
    ||||||| |||| || |||||||||||||||||||||||||||| |||| ||| | ||||||||| |||||||    
T  21395718 gataaaggattggtagggagagaccaagctctcgaattcttggaggggagacaaccaagactcttgaatttct 21395646  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 18131909 - 18131861
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||||||||    
T  18131909 gataaaggattggtagggagagaccaagctctcgaatacttggaaggga 18131861  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 4303042 - 4303074
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  4303042 ggagagaccaagctctcgaattcttggagggga 4303074  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 18133099 - 18133067
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  18133099 ggagagaccaagctctcgaattcttggagggga 18133067  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 21535810 - 21535842
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  21535810 ggagagaccaagctctcgaattcttggagggga 21535842  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 18955444 - 18955525
Alignment:
Q  123 ggttatttagataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttct 204  Q
    |||||||| ||||||| |||| || ||||||||||| ||||| ||||||||||||||| | |||| ||||||| | ||||||    
T  18955444 ggttatttggataaaggattggtagggagagaccaatctctctaattcttggaagggagagacctgagactctcagatttct 18955525  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 13218801 - 13218769
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||| ||||||    
T  13218801 ggagagaccaagctctcgaattcttgcaaggga 13218769  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 19934642 - 19934714
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttct 204  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| |||| | | | ||||||||| |||||||    
T  19934642 gataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactcttgaatttct 19934714  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 29526163 - 29526117
Alignment:
Q  134 taaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||| |||| || |||||||||||||||||||||||||||| ||||    
T  29526163 taaaggattggtagggagagaccaagctctcgaattcttggagggga 29526117  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 22950349 - 22950397
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  22950349 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 22950397  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 24150275 - 24150307
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||||||||||||| |||||||||||||||    
T  24150275 ggagagaccaagctctctaattcttggaaggga 24150307  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 39701715 - 39701667
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  39701715 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 39701667  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 48637665 - 48637593
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttct 204  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| |||| | | | |||||||| ||||||||    
T  48637665 gataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcaaatttct 48637593  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 54994695 - 54994743
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || |||||||||||||||||||||||||||| ||||    
T  54994695 gataaaggattggtagggagagaccaagctctcgaattcttggagggga 54994743  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 2386428 - 2386379
Alignment:
Q  131 agataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||| || | || |||||||||||||||||||||||||||| ||||    
T  2386428 agataaaggataggtagggagagaccaagctctcgaattcttggagggga 2386379  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 592587 - 592635
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || |||||| ||||||||||||||||||||| ||||    
T  592587 gataaaggattggtagggagagcccaagctctcgaattcttggagggga 592635  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 7197802 - 7197850
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  7197802 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 7197850  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 40976891 - 40976923
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  40976891 ggagagaccaagctctcgaattcttggagggga 40976923  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 45826263 - 45826231
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  45826263 ggagagaccaagctctcgaattcttggagggga 45826231  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 27869337 - 27869408
Alignment:
Q  107 aaagggagggtcatttggttatttagataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||| ||||  ||||||| |||||   |||| || |||||||||||||||| ||||||||||||||||    
T  27869337 aaagggagggccattctgttatttggataag--attggtagggagagaccaagctcttgaattcttggaaggga 27869408  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 27021342 - 27021391
Alignment:
Q  124 gttatttagataaagtattgttaaggagagaccaagctctcgaattcttg 173  Q
    ||||||| ||||||| | ||||| ||||||| ||||||||||||||||||    
T  27021342 gttatttggataaagaaatgttagggagagatcaagctctcgaattcttg 27021391  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 6081287 - 6081335
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  6081287 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 6081335  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 6082494 - 6082542
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  6082494 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 6082542  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 17901161 - 17901193
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  17901161 ggagagaccaagctctcgaattcttggagggga 17901193  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 11162 - 11210
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||  |||||||||||    
T  11162 gataaaggattggtagggagagaccaagctctcgaaaacttggaaggga 11210  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 79623 - 79655
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  79623 ggagagaccaagctctcgaattcttggagggga 79655  T

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Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 80819 - 80851
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaaggga 180  Q
    |||||||||||||||||||||||||||| ||||    
T  80819 ggagagaccaagctctcgaattcttggagggga 80851  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 205716 - 205668
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  205716 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 205668  T

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Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 211793 - 211745
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  211793 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 211745  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 8089846 - 8089798
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  8089846 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 8089798  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 10582786 - 10582834
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  10582786 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 10582834  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 10583992 - 10584040
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  10583992 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 10584040  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 30038169 - 30038113
Alignment:
Q  148 ggagagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttct 204  Q
    ||||||||||| |||| |||||||||||||||| | ||| | ||||||| |||||||    
T  30038169 ggagagaccaaactcttgaattcttggaagggagagaccgacgactcttgaatttct 30038113  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 49122025 - 49122097
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacctaagactcttaaatttct 204  Q
    ||||||| |||| || ||||||| ||||||||||||| |||||| |||| | | | |||||||| ||||||||    
T  49122025 gataaaggattggtagggagagatcaagctctcgaatacttggaggggagagaaccaagactctcaaatttct 49122097  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 49122214 - 49122262
Alignment:
Q  132 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 180  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  49122214 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 49122262  T

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