View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_low_18 (Length: 232)
Name: NF14668_low_18
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 37960944 - 37961158
Alignment:
| Q |
1 |
ttaactctatctctttcatgtgaaggaagatcaagaggcagagagtattcgagagacaaattattgttgttttttgctatggcttttgaaagagaggccc |
100 |
Q |
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| T |
37960944 |
ttaactctatctctttcatgtgaaggaagatcaagaggcggagagtattcaagagacaaattattgttgttttttgctatggcttttgaaagagaggccc |
37961043 |
T |
|
| Q |
101 |
aaaatttcatgaaatggtgaagtgattttccgtctgcagcaacatggttgtaacttaggcaaatagacaagccggagtttggaagaacggtgacttgaat |
200 |
Q |
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| T |
37961044 |
aaaatttcacgaaatggtgaagtgattttccgtctgcagcaacatggttgtaacttaggcaaatagacaagccggagtttggaagaacggtgacttgaat |
37961143 |
T |
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| Q |
201 |
agccattatagggat |
215 |
Q |
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| T |
37961144 |
agccattatagggat |
37961158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 37907073 - 37906910
Alignment:
| Q |
54 |
agacaaattattgttgttttttgctatggcttttgaaagagaggcccaaaatttcatgaaatggtgaagt--gattttccgtctgcagcaacatggttgt |
151 |
Q |
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| T |
37907073 |
agacaaattattgttattttttgctatggcttttgaaagagaagcccaaaatttcatgaaatgatgaagtacgattttccgtatgcagcaacatggttgt |
37906974 |
T |
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| Q |
152 |
aacttaggcaaatagacaagccggagtttggaagaacggtgacttgaatagccattatagggat |
215 |
Q |
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| T |
37906973 |
aactgaggcaaatagagaacccggagtttggaagaacagtgactggaatagacattatagggat |
37906910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 37915281 - 37915145
Alignment:
| Q |
4 |
actctatctctttcatgtgaaggaagatcaagaggcagagagtattcgagagacaaattattgttgttttttgctatggcttttgaaagagaggcccaaa |
103 |
Q |
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| T |
37915281 |
actctatctctttcatgggaaggaagatcaagaggcggagagtattcaagagacaa---ctcgttgttgtttgttatagctttggaaacaaatgcccaaa |
37915185 |
T |
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| Q |
104 |
atttcatgaaatggtgaagtgattttccgtctgcagcaac |
143 |
Q |
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| T |
37915184 |
atttcatgaaatgatgaagtgattttccgtctgcaacaac |
37915145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 3783395 - 3783338
Alignment:
| Q |
2 |
taactctatctctttcatgtgaagg---aagatcaagaggcagagagtattcgagaga |
56 |
Q |
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| T |
3783395 |
taactctatctctttcatgtgaaggaagaagatcaagaggcagagagtgttctagaga |
3783338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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