View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_low_2 (Length: 623)
Name: NF14668_low_2
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 14597595 - 14598204
Alignment:
| Q |
1 |
gattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacatacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597595 |
gattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacatacc |
14597694 |
T |
|
| Q |
101 |
ttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
14597695 |
ttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctcgaactagtgcattc |
14597794 |
T |
|
| Q |
201 |
atggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597795 |
atggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatga |
14597894 |
T |
|
| Q |
301 |
tcttgtcgtctgcacttcccattaatggatcgggactgggcggcttcaacataacctatttatatacatgcatgcatttaaattatgatatatatgtgaa |
400 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14597895 |
tcttgtcgtcttcacttcccattaacggatcagggctgggcggcttcaacatcacctatttatatacatgcatgcatttaaattatgaaatatatgtgaa |
14597994 |
T |
|
| Q |
401 |
acataagttaaagttcaggattgaatttattcttag--gtataatatatgagtaaatacctgaagtattccggcatggtcacctttagcatgttccctag |
498 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14597995 |
acataagttaaagttcaggattgaatttattcttagatatataatatatgagtaaatacctgaagtattccggcatggtcacctttagcatgttcgctag |
14598094 |
T |
|
| Q |
499 |
aagaagaaccccaagtgccgggccaatgggtgccatcagccatccaagtggcctttaatactttaacaggctccaaagggtcagccccagtctccttcaa |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598095 |
aagaagaaccccaagtgccgggccaatgggtgccatcagccatccaagtggccttcaatactttaacaggctccaaagggtcagccccagtctccttcaa |
14598194 |
T |
|
| Q |
599 |
atgcttcatc |
608 |
Q |
| |
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|||||||||| |
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| T |
14598195 |
atgcttcatc |
14598204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 14610910 - 14610517
Alignment:
| Q |
1 |
gattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacatacc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
14610910 |
gattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgccacctttgtccatcatgaaacacattcc |
14610811 |
T |
|
| Q |
101 |
ttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattc |
200 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| ||| | ||||||| |
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| T |
14610810 |
ttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgataggactgcagatgctcgaacaagtgcattc |
14610711 |
T |
|
| Q |
201 |
atggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaatctatga |
300 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||| |||| |
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| T |
14610710 |
atggcaccggctttcttgttatgatcataacctggcctcttctctcgagatacataaaccaacatcggcaaacgtgtatctacgtcactgaaatcaatga |
14610611 |
T |
|
| Q |
301 |
tcttgtcgtctgcacttcccattaatggatcgggactgggcggcttcaacataacctatttatatacatgcatgcatttaaattatgatatata |
394 |
Q |
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| |||| || |||||||| | |||||||||| ||||| || ||||| | ||| ||||| | ||||||| |||| | |||||||| |||||||| |
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| T |
14610610 |
tgttgttgtttgcacttcgcgttaatggatcaggacttggaggctttagcatcacctactcatatacacgcatatagttaaattaagatatata |
14610517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 424 - 609
Target Start/End: Complemental strand, 14610456 - 14610271
Alignment:
| Q |
424 |
aatttattcttaggtataatatatgagtaaatacctgaagtattccggcatggtcacctttagcatgttccctagaagaagaaccccaagtgccgggcca |
523 |
Q |
| |
|
||||||||||||| ||||||| | || |||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||| || || ||||| |
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| T |
14610456 |
aatttattcttagatataatacacaagaaaatacctgaagtattccagaatggtcacctttagcatgttcgctagaagaagaagcccacgtaccaggcca |
14610357 |
T |
|
| Q |
524 |
atgggtgccatcagccatccaagtggcctttaatactttaacaggctccaaagggtcagccccagtctccttcaaatgcttcatct |
609 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||| || | ||||| |||| ||||||||| ||||||| || |||||||||| |
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| T |
14610356 |
atgggtgccatcagccatccaggtagcctttattaccttgataggcttagaaggatcagccccactctccttgaattgcttcatct |
14610271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 44634390 - 44634158
Alignment:
| Q |
24 |
tcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattat |
123 |
Q |
| |
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|||||||||||||| ||||| ||||| |||| ||| ||||| || |||||| |||| ||||| |||||||||||||| | | ||| | || | |
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| T |
44634390 |
tcaataccttcaaacctttgagggaattgaacataacatatcctgtcaccacctctgtcaagcataaagcacataccttccctcaaggccaaggagttgt |
44634291 |
T |
|
| Q |
124 |
agatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtg |
223 |
Q |
| |
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|||| || |||||||| ||||||||||||| |||||||||||| |||| || ||| | || ||| | ||||||||||| ||||||||||||||||| |
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| T |
44634290 |
agatgtaatgatcacagtcaagattgagaacgaatggtccattggacatgacagcactagttcgaacaagagcattcatggcgccagctttcttgttgtg |
44634191 |
T |
|
| Q |
224 |
atcataacctggcctcttctctcgagatacata |
256 |
Q |
| |
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|||||| || ||||||||||| ||||| ||||| |
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| T |
44634190 |
atcatatcccggcctcttctcacgagacacata |
44634158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 29918134 - 29918207
Alignment:
| Q |
183 |
gctctaactaatgcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacata |
256 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||||| | ||||||| ||| ||||| |
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| T |
29918134 |
gctctaaccaatgcattcatggccccagcttttttgttgtgatcgtaacctggacgtttctctctagaaacata |
29918207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 54383191 - 54383252
Alignment:
| Q |
195 |
gcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacata |
256 |
Q |
| |
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|||||||||||||| |||||||||| ||| | | | |||||||| ||||||| ||||||||| |
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|
| T |
54383191 |
gcattcatggcaccggctttcttgtggtgttgaaatcctggccttttctctctagatacata |
54383252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41490606 - 41490666
Alignment:
| Q |
1 |
gattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagca |
61 |
Q |
| |
|
|||||||||| ||||| || || ||||| ||||||||||||||||| || |||| |||||| |
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|
| T |
41490606 |
gattggcataccgatctgatgggtcaattccttcaaatctttggggaaattgaacatagca |
41490666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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