View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14668_low_3 (Length: 550)

Name: NF14668_low_3
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14668_low_3
NF14668_low_3
[»] chr2 (3 HSPs)
chr2 (24-535)||(7240498-7241009)
chr2 (379-412)||(9556247-9556280)
chr2 (379-412)||(10884550-10884583)
[»] chr4 (2 HSPs)
chr4 (95-239)||(48732986-48733130)
chr4 (366-411)||(1706618-1706663)
[»] chr6 (2 HSPs)
chr6 (367-411)||(20370880-20370924)
chr6 (371-411)||(20351149-20351189)
[»] chr8 (6 HSPs)
chr8 (360-411)||(1433538-1433589)
chr8 (372-411)||(27028833-27028872)
chr8 (372-413)||(25097388-25097429)
chr8 (379-412)||(26473781-26473814)
chr8 (379-411)||(10075580-10075612)
chr8 (372-412)||(25097394-25097434)
[»] chr7 (3 HSPs)
chr7 (365-407)||(27548258-27548300)
chr7 (374-411)||(529379-529416)
chr7 (371-411)||(48917375-48917415)
[»] chr3 (2 HSPs)
chr3 (363-409)||(25964436-25964482)
chr3 (379-411)||(16790407-16790439)
[»] chr1 (1 HSPs)
chr1 (379-412)||(25479589-25479622)


Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 24 - 535
Target Start/End: Complemental strand, 7241009 - 7240498
Alignment:
Q  24 atttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagagcaactgtcat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241009 atttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagagcaactgtcat 7240910  T
Q  124 cggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccgctgattcgtgtcagtgccgctagaattctaagaaatttatgcaact 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7240909 cggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccactgattcgtgtcagtgccgctagaattctaagaaatttatgcaact 7240810  T
Q  224 acagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaacaattacaagtt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240809 acagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaacaattacaagtt 7240710  T
Q  324 ttatcaaccaagttcaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaactctatgaaaat 423  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  7240709 ttatcaaccaagtccaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaactatctgaaaat 7240610  T
Q  424 ggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccataaatatgctaaaataagtcgattca 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7240609 ggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccatagatatgctaaaataagtcgattca 7240510  T
Q  524 aatagaccctat 535  Q
    ||||||||||||    
T  7240509 aatagaccctat 7240498  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 9556280 - 9556247
Alignment:
Q  379 ttttcataagctatctaggatagcttatgaaaac 412  Q
    |||||||||||| |||||||||||||||||||||    
T  9556280 ttttcataagctttctaggatagcttatgaaaac 9556247  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 10884550 - 10884583
Alignment:
Q  379 ttttcataagctatctaggatagcttatgaaaac 412  Q
    |||||||||||| |||||||||||||||||||||    
T  10884550 ttttcataagctctctaggatagcttatgaaaac 10884583  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 48732986 - 48733130
Alignment:
Q  95 tggcattagaaagcaagagcaactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccgctgattcgtgtcagtgc 194  Q
    ||||||||||||||||||| ||||||||| | ||||||||| ||| | | || | ||||||| | ||| |||||||||  ||| || ||||  |||  ||    
T  48732986 tggcattagaaagcaagagtaactgtcattgaattttgaagctgaaattacttggaaggcttgtagaatcattgaaagatccgttgcttcgcatcaaggc 48733085  T
Q  195 cgctagaattctaagaaatttatgcaactacagtggatcagaatg 239  Q
     |||  |||||||||||||||||||| ||| ||||| ||||||||    
T  48733086 agctgaaattctaagaaatttatgcatctatagtggctcagaatg 48733130  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 1706618 - 1706663
Alignment:
Q  366 aagctttaagctgttttcataagctatctaggatagcttatgaaaa 411  Q
    ||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  1706618 aagctataagctgttttcataaactatcttggacagcttatgaaaa 1706663  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 20370880 - 20370924
Alignment:
Q  367 agctttaagctgttttcataagctatctaggatagcttatgaaaa 411  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  20370880 agctttaagctgttttcatatgctatctaggagtgcttatgaaaa 20370924  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 20351149 - 20351189
Alignment:
Q  371 ttaagctgttttcataagctatctaggatagcttatgaaaa 411  Q
    ||||| |||||||||||||||||| ||||||||||| ||||    
T  20351149 ttaagatgttttcataagctatctcggatagcttataaaaa 20351189  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 1433538 - 1433589
Alignment:
Q  360 ttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaa 411  Q
    |||| |||||||||||| ||||||||||||||||  ||| ||||||||||||    
T  1433538 ttatttaagctttaagcagttttcataagctatcctggagagcttatgaaaa 1433589  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 411
Target Start/End: Original strand, 27028833 - 27028872
Alignment:
Q  372 taagctgttttcataagctatctaggatagcttatgaaaa 411  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  27028833 taagctgttttcataagctatcttggagagcttatgaaaa 27028872  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 25097388 - 25097429
Alignment:
Q  372 taagctgttttcataagctatctaggatagcttatgaaaact 413  Q
    ||||||||||||||||||||||  ||| ||||||||||||||    
T  25097388 taagctgttttcataagctatcctggagagcttatgaaaact 25097429  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 26473781 - 26473814
Alignment:
Q  379 ttttcataagctatctaggatagcttatgaaaac 412  Q
    |||||||||||| |||||||||||||||||||||    
T  26473781 ttttcataagctctctaggatagcttatgaaaac 26473814  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 10075580 - 10075612
Alignment:
Q  379 ttttcataagctatctaggatagcttatgaaaa 411  Q
    |||||||||||| ||||||||||||||||||||    
T  10075580 ttttcataagctctctaggatagcttatgaaaa 10075612  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 25097434 - 25097394
Alignment:
Q  372 taagctgttttcataagctatctaggatagcttatgaaaac 412  Q
    ||||| ||||||||||||| || ||||||||||||||||||    
T  25097434 taagcagttttcataagctctccaggatagcttatgaaaac 25097394  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 27548258 - 27548300
Alignment:
Q  365 taagctttaagctgttttcataagctatctaggatagcttatg 407  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
T  27548258 taagctataagctgttttcataagctatcttggataacttatg 27548300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 529379 - 529416
Alignment:
Q  374 agctgttttcataagctatctaggatagcttatgaaaa 411  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  529379 agctgttttcataagctatcttggagagcttatgaaaa 529416  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 48917415 - 48917375
Alignment:
Q  371 ttaagctgttttcataagctatctaggatagcttatgaaaa 411  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  48917415 ttaagttgttttcataagctatcttggagagcttatgaaaa 48917375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 25964436 - 25964482
Alignment:
Q  363 tgtaagctttaagctgttttcataagctatctaggatagcttatgaa 409  Q
    |||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  25964436 tgtaagctataagctgttttcataagctatcccggaaagcttatgaa 25964482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 16790439 - 16790407
Alignment:
Q  379 ttttcataagctatctaggatagcttatgaaaa 411  Q
    |||||||||||||||| ||||||||||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaa 16790407  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 25479622 - 25479589
Alignment:
Q  379 ttttcataagctatctaggatagcttatgaaaac 412  Q
    |||||||||||| |||||||||||||||||||||    
T  25479622 ttttcataagctctctaggatagcttatgaaaac 25479589  T

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