View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_low_4 (Length: 547)
Name: NF14668_low_4
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 5084049 - 5084579
Alignment:
| Q |
1 |
gaaagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggtg |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
5084049 |
gaaagaagaagtagaagaggaaattgaccaatttctaagcatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatctgtg |
5084148 |
T |
|
| Q |
101 |
gttatgnnnnnnnagtactcatcaaagctaagcaagtgaagaagtaatagtagagtgatacagagagaatgcagaggcatgagtcgcaagtgtatagttt |
200 |
Q |
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|| ||| |||| | | |||||||||||||||||| ||||| |||||||| ||||||||| |||||||| |||| ||| ||||| || |
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| T |
5084149 |
gtgatgttttttt--tactacttatagctaagcaagtgaagaaataataatagagtgaagtagagagaatacagaggcaagagtgaaaagagtataactt |
5084246 |
T |
|
| Q |
201 |
ggccattttcaataagatattaaatgcatgagtctaagcactgatgatgatgatattatatataatattaatatacacaggcttatgtttannnnnnnnn |
300 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5084247 |
ggccattttcaatacgatattatatgcatgagtctaagcactgatgatgatgatattatatataatattaatatacacaggcttatgtttatttattttt |
5084346 |
T |
|
| Q |
301 |
-ccttcaaaattaaaagtgtatagttatgcgtgactaagtgtcttcccaccttgttgcacaagaaaacacagtcaactaaagttgctatataatgtaagg |
399 |
Q |
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| T |
5084347 |
tccttcaaaattaaaagtgtatagttatgcgtgactaagtgtcttcccaccttgttgcacaagaaaacacagtcaactaaagttgctatataatgtaatg |
5084446 |
T |
|
| Q |
400 |
atccaaaatgtttccaacacacaaagtcgaacatcaataccgtatgtgcatataatttctgatatttatattgttttttcttccaacaccacacacattt |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5084447 |
atccaaaatgtttccaacacacaaagtcgaacatcaataccgtatgtgcatataatttctgatatttatattgttttttcttccaacaccacatacattt |
5084546 |
T |
|
| Q |
500 |
gagttgtattttatacaatgtcagatgctgttt |
532 |
Q |
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| T |
5084547 |
gagttgtattttatacaatgtcagatgctgttt |
5084579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 5094018 - 5093921
Alignment:
| Q |
2 |
aaagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
5094018 |
aaagaagaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggttattgaggatttgaatgcaagaagtgaaaattcatcggt |
5093921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5111022 - 5110921
Alignment:
| Q |
1 |
gaaagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggtg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| |
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| T |
5111022 |
gaaagaagaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtg |
5110923 |
T |
|
| Q |
101 |
gt |
102 |
Q |
| |
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|| |
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|
| T |
5110922 |
gt |
5110921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 5110902 - 5110858
Alignment:
| Q |
126 |
agctaagcaagtgaagaagtaatagtagagtgatacagagagaat |
170 |
Q |
| |
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| T |
5110902 |
agctaagcaagtgaagaggtaataatagagtgaggcagagagaat |
5110858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14427831 - 14427934
Alignment:
| Q |
1 |
gaaagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggtg |
100 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14427831 |
gaaagaagaagcagaagtggaaattgaccaattactaagaatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatcggtg |
14427930 |
T |
|
| Q |
101 |
gtta |
104 |
Q |
| |
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|||| |
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|
| T |
14427931 |
gtta |
14427934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 16872463 - 16872370
Alignment:
| Q |
6 |
aagaagtagaagaggaaattgaccaatta---ctaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatc |
96 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
16872463 |
aagaagtagaagaggagattgaccaattattactaagcttgtgataagggtctaaggtaatagaggatttgaatgcaagaagtgaaaattcatc |
16872370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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