View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14668_low_5 (Length: 455)
Name: NF14668_low_5
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 63 - 439
Target Start/End: Complemental strand, 10874173 - 10873797
Alignment:
| Q |
63 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10874173 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
10874074 |
T |
|
| Q |
163 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10874073 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
10873974 |
T |
|
| Q |
263 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagaca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10873973 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagaca |
10873874 |
T |
|
| Q |
363 |
ttgctgaaaaaaccactcaaggagtcttgccgaagaagctacttacgttacctccacccaaaatctccgaccaaaaa |
439 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10873873 |
ttgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaa |
10873797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 63 - 439
Target Start/End: Complemental strand, 10879244 - 10878868
Alignment:
| Q |
63 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10879244 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
10879145 |
T |
|
| Q |
163 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879144 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
10879045 |
T |
|
| Q |
263 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagaca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10879044 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagaca |
10878945 |
T |
|
| Q |
363 |
ttgctgaaaaaaccactcaaggagtcttgccgaagaagctacttacgttacctccacccaaaatctccgaccaaaaa |
439 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10878944 |
ttgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaa |
10878868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 63 - 439
Target Start/End: Complemental strand, 10884315 - 10883939
Alignment:
| Q |
63 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10884315 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
10884216 |
T |
|
| Q |
163 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884215 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
10884116 |
T |
|
| Q |
263 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagaca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884115 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagaca |
10884016 |
T |
|
| Q |
363 |
ttgctgaaaaaaccactcaaggagtcttgccgaagaagctacttacgttacctccacccaaaatctccgaccaaaaa |
439 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10884015 |
ttgctgcaaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaa |
10883939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 70 - 439
Target Start/End: Original strand, 10866139 - 10866508
Alignment:
| Q |
70 |
agaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgttgttttc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866139 |
agaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgttgttttc |
10866238 |
T |
|
| Q |
170 |
tttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattc |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866239 |
tttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattc |
10866338 |
T |
|
| Q |
270 |
tcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagacattgctga |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866339 |
tcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaagaagacattgctgc |
10866438 |
T |
|
| Q |
370 |
aaaaaccactcaaggagtcttgccgaagaagctacttacgttacctccacccaaaatctccgaccaaaaa |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10866439 |
aaaaaccactcaaggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaa |
10866508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 68 - 357
Target Start/End: Complemental strand, 10888252 - 10887948
Alignment:
| Q |
68 |
agagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatac---------------tgtact |
152 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| || |||| | |
|
|
| T |
10888252 |
agagagatggacgttcagcagaaaataagcaaaaatgagaagaagaaccaaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatt |
10888153 |
T |
|
| Q |
153 |
taacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcct |
252 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10888152 |
taacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcct |
10888053 |
T |
|
| Q |
253 |
cacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaa |
352 |
Q |
| |
|
|||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||| || |
|
|
| T |
10888052 |
cacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggcactgccttcatcattcattacgatgatgat |
10887953 |
T |
|
| Q |
353 |
gaaga |
357 |
Q |
| |
|
||||| |
|
|
| T |
10887952 |
gaaga |
10887948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 149 - 357
Target Start/End: Original strand, 39675791 - 39675999
Alignment:
| Q |
149 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg |
248 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39675791 |
tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatg |
39675890 |
T |
|
| Q |
249 |
tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatga |
348 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||| |||| | || ||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
39675891 |
tcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatccttcattacgatga |
39675990 |
T |
|
| Q |
349 |
agaagaaga |
357 |
Q |
| |
|
||||||||| |
|
|
| T |
39675991 |
agaagaaga |
39675999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 149 - 340
Target Start/End: Original strand, 10045784 - 10045975
Alignment:
| Q |
149 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg |
248 |
Q |
| |
|
||||||||||| | ||||||| ||||| |||||||||||||| || |||||||| ||||||||||||| |||||||||||||| |||||||| || | |
|
|
| T |
10045784 |
tacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacacctcttcatg |
10045883 |
T |
|
| Q |
249 |
tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcat |
340 |
Q |
| |
|
| |||||||||||||||||| || | ||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
10045884 |
ttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcattcttcat |
10045975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 10874227 - 10874194
Alignment:
| Q |
9 |
catcatcaatcatcccctaaactgaactgaactc |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10874227 |
catcatcaatcatcccctaaactgaactgaactc |
10874194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 10879298 - 10879265
Alignment:
| Q |
9 |
catcatcaatcatcccctaaactgaactgaactc |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10879298 |
catcatcaatcatcccctaaactgaactgaactc |
10879265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 10884369 - 10884336
Alignment:
| Q |
9 |
catcatcaatcatcccctaaactgaactgaactc |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10884369 |
catcatcaatcatcccctaaactgaactgaactc |
10884336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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