View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_low_8 (Length: 382)
Name: NF14668_low_8
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 42960271 - 42959918
Alignment:
| Q |
18 |
ccttacgctcttcatcgctgtgtcgaaggaatccggttagcaccaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaacta |
117 |
Q |
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| T |
42960271 |
ccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaacta |
42960172 |
T |
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| Q |
118 |
cagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgt |
217 |
Q |
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| T |
42960171 |
cagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgt |
42960072 |
T |
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| Q |
218 |
gatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960071 |
gatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatgga |
42959972 |
T |
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| Q |
318 |
tcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
371 |
Q |
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| T |
42959971 |
tcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
42959918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 371
Target Start/End: Original strand, 5504586 - 5504817
Alignment:
| Q |
140 |
tgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcat |
239 |
Q |
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| T |
5504586 |
tgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccctagagcagttctgcaaagacactgtcatcacaatttggcattaccat |
5504685 |
T |
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| Q |
240 |
ggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgg |
339 |
Q |
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| T |
5504686 |
ggtggatgtcatgtgggaaaggtagttagccctgattataaggttcttgacgttgacagactccgagtcgtcgatggttcaacgtttactgaatcaccag |
5504785 |
T |
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| Q |
340 |
gaacaaatcctcaagctactgtcatgatgatg |
371 |
Q |
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| T |
5504786 |
gaacaaatcctcaagccactgtgatgatgatg |
5504817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
195 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
244 |
Q |
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| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
195 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
244 |
Q |
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| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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