View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14668_low_9 (Length: 373)

Name: NF14668_low_9
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14668_low_9
NF14668_low_9
[»] chr7 (3 HSPs)
chr7 (17-274)||(6446730-6446984)
chr7 (310-357)||(25859212-25859259)
chr7 (270-309)||(6446569-6446608)
[»] chr8 (1 HSPs)
chr8 (310-357)||(8341156-8341203)
[»] chr4 (5 HSPs)
chr4 (310-357)||(9607277-9607324)
chr4 (312-357)||(53685352-53685397)
chr4 (310-357)||(13189464-13189511)
chr4 (310-356)||(24404838-24404884)
chr4 (311-354)||(22315195-22315238)
[»] chr1 (2 HSPs)
chr1 (310-357)||(48660284-48660331)
chr1 (310-357)||(5127520-5127567)
[»] scaffold0060 (1 HSPs)
scaffold0060 (316-357)||(34734-34775)
[»] chr2 (5 HSPs)
chr2 (308-357)||(21190199-21190248)
chr2 (309-357)||(30176263-30176311)
chr2 (310-357)||(45155626-45155673)
chr2 (203-274)||(42992477-42992548)
chr2 (308-357)||(3400127-3400176)
[»] chr6 (1 HSPs)
chr6 (309-357)||(2356619-2356667)
[»] chr3 (2 HSPs)
chr3 (309-357)||(50482675-50482723)
chr3 (312-357)||(53489067-53489112)
[»] chr5 (1 HSPs)
chr5 (308-357)||(34856801-34856850)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 6446984 - 6446730
Alignment:
Q  17 atcacaccaatcatcaccacaaggatgaattgtaatgttctgcagagtt-actgcctccattaactcgttttcgaactcatcttcttctggtgtgttgca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  6446984 atcacaccaatcatcaccacaaggatgaattgtaatgttctgccaagttcactgcctccattaaccagttttccaactcatcttcttctggtgtgttgca 6446885  T
Q  116 gctgcatgcaagagttgcgttattatgatgatacaatcaaagtttgtaaaagatatcttaatttaaataaaagcaaaaatatggccctgaaattgtttca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||||||||||| ||||||||| |||||    
T  6446884 gctgcatgcaagagttgcgttattatgatgatacaatcaaagtttataaaagatatc----tttaaataaaagcaaaaatatggtcctgaaattatttca 6446789  T
Q  216 agagatatatttcatttaagttggatttaaatgaaatcaaagatttggtcttgtaattg 274  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  6446788 agagatatatttcatttaaattggatttaaatgaaatcaaagatttggtcttgcaattg 6446730  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 25859259 - 25859212
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25859259 cagggccgtccctgagtaattggaggctcgactctcatataaaaatag 25859212  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 6446608 - 6446569
Alignment:
Q  270 aattgaagaacactacaaggcatatcacaaaatcaataag 309  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  6446608 aattgaagaacatttcaaggcatatcacaaaatcaataag 6446569  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 8341156 - 8341203
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341156 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 8341203  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 9607324 - 9607277
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9607324 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 9607277  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 53685352 - 53685397
Alignment:
Q  312 gggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  53685352 gggccgttcccgagtaattggaggctcggctctcatataaaaatag 53685397  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 13189511 - 13189464
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||||    
T  13189511 cagggccgtccctaggtaattggaggctcggctctcatgtaaaaatag 13189464  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 24404884 - 24404838
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaata 356  Q
    |||||||||||||||||||||||||||||| ||||||| | ||||||    
T  24404884 cagggccgtccctgagtaattggaggctcgactctcatgtgaaaata 24404838  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 22315195 - 22315238
Alignment:
Q  311 agggccgtccctgagtaattggaggctcggctctcatataaaaa 354  Q
    ||||||||||||   |||||||||||||||||||||||||||||    
T  22315195 agggccgtccctagataattggaggctcggctctcatataaaaa 22315238  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 48660331 - 48660284
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  48660331 caggaccgtccctgagtaattggaggctcggctctcatataaaaatag 48660284  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 5127520 - 5127567
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  5127520 cagggccgtccctgagtaattggaggctcggctctcatgtgaaaatag 5127567  T

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Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 34775 - 34734
Alignment:
Q  316 cgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34775 cgtccctgagtaattggaggctcggctctcatataaaaatag 34734  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 21190199 - 21190248
Alignment:
Q  308 agcagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  21190199 agcagggccgtccctgagtaattggaggctcggctctcatgtgaaaatag 21190248  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 30176311 - 30176263
Alignment:
Q  309 gcagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  30176311 gcagggccgtccctgagtaattggaggctcggctctcatgtgaaaatag 30176263  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 45155626 - 45155673
Alignment:
Q  310 cagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  45155626 cagggccgtccctgagtaattggaggctcggctctcatgtgaaaatag 45155673  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 42992548 - 42992477
Alignment:
Q  203 tgaaattgtttcaagagatatatttcatttaagttggatttaaatgaaatcaaagatttggtcttgtaattg 274  Q
    |||||||||||||| | |||||||| |||||| |||||||||||| |||||||| || |||| ||| |||||    
T  42992548 tgaaattgtttcaaaatatatattttatttaaattggatttaaataaaatcaaatatatggttttgaaattg 42992477  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 3400176 - 3400127
Alignment:
Q  308 agcagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    ||||||||||||||| |||| | ||||||||||||||||| | |||||||    
T  3400176 agcagggccgtccctaagtattcggaggctcggctctcatgttaaaatag 3400127  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 2356619 - 2356667
Alignment:
Q  309 gcagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  2356619 gcagggccatccctgggtaattggaggctcggctctcatatataaatag 2356667  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 50482675 - 50482723
Alignment:
Q  309 gcagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  50482675 gcagggccgttcctaagtaattggaggctcggctctcatgtaaaaatag 50482723  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 53489067 - 53489112
Alignment:
Q  312 gggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    |||| |||||||| |||||||||| |||||||| ||||||||||||    
T  53489067 gggctgtccctgaataattggaggttcggctcttatataaaaatag 53489112  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 34856850 - 34856801
Alignment:
Q  308 agcagggccgtccctgagtaattggaggctcggctctcatataaaaatag 357  Q
    ||||||||||||| |  ||||||||||||||||||||||| |||||||||    
T  34856850 agcagggccgtccttaggtaattggaggctcggctctcatgtaaaaatag 34856801  T

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