View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14669_high_1 (Length: 470)
Name: NF14669_high_1
Description: NF14669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14669_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 11483861 - 11484313
Alignment:
| Q |
18 |
gttggacctgacacaatttgatgaaaccaacctgtgaggcgatgactatccttacttataaacacttgtttagactcatctctcatccaatataagattt |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483861 |
gttggacctgacacaatttgatgattccaacctgtgagacgatgattatccttacttataaacacttgtttagactcatctctcatccaatataagattt |
11483960 |
T |
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| Q |
118 |
ttaacgcactccatcacatccaacactattttacttgatgcgtgtatctact-caaacaaaactatcctcatcgaaatttctaaaaattttcatccatac |
216 |
Q |
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|||||||| || ||||| |||| ||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||| ||| |
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| T |
11483961 |
ttaacgcattctatcacgtccagcactattgtacttgatgcgtatatctacttcaaagaaaactatcctcatcgaaatttctaacaattttcatc-ataa |
11484059 |
T |
|
| Q |
217 |
ataattgatcattcattgcattggtccacacgctagaatttatctatcattgaaacttcaaagatgaaaattgtgcaacttttctttgtataattattat |
316 |
Q |
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| T |
11484060 |
ttgatcgatcattcattgcattggtccacacgctagaatttatttatagttgaaacttcaaagatgaaaattgtgcaacttttctttgtatatttattat |
11484159 |
T |
|
| Q |
317 |
tttgtcagatgtagatacaattattatgactactattcattcatccaaccatatgcattgccaaccacccaaaaacagtactgttatcattttcaattca |
416 |
Q |
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| T |
11484160 |
tttgtcagatgtagatacaattattattactactattcattcatccaactatatgcattgccaaccacccaaaaatagtactgttatcattatcaattca |
11484259 |
T |
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| Q |
417 |
ttcatatcaaagtcttcttgagtctttgctccttacttgctatcacttcgatcc |
470 |
Q |
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| T |
11484260 |
ttcatatccaagtcttcttgagtctttgctccttactagctatcacttctatcc |
11484313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 26798336 - 26798377
Alignment:
| Q |
289 |
gtgcaacttttctttgtataattattattttgtcagatgtag |
330 |
Q |
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| T |
26798336 |
gtgcaacatttctttgtatatttattattttgtcagatgtag |
26798377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 26801252 - 26801285
Alignment:
| Q |
297 |
tttctttgtataattattattttgtcagatgtag |
330 |
Q |
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| T |
26801252 |
tttctttgtatatttattattttgtcagatgtag |
26801285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 26808802 - 26808835
Alignment:
| Q |
297 |
tttctttgtataattattattttgtcagatgtag |
330 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
26808802 |
tttctttgtatatttattattttgtcagatgtag |
26808835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 26816192 - 26816225
Alignment:
| Q |
297 |
tttctttgtataattattattttgtcagatgtag |
330 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
26816192 |
tttctttgtatatttattattttgtcagatgtag |
26816225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 26823829 - 26823862
Alignment:
| Q |
297 |
tttctttgtataattattattttgtcagatgtag |
330 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
26823829 |
tttctttgtatatttattattttgtcagatgtag |
26823862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 10218865 - 10218906
Alignment:
| Q |
289 |
gtgcaacttttctttgtataattattattttgtcagatgtag |
330 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
10218865 |
gtgcaacatttctttgtatatttattattttgtcagatgtag |
10218906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 10255774 - 10255815
Alignment:
| Q |
289 |
gtgcaacttttctttgtataattattattttgtcagatgtag |
330 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
10255774 |
gtgcaacatttctttgtatatttattattttgtcagatgtag |
10255815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 10227875 - 10227908
Alignment:
| Q |
297 |
tttctttgtataattattattttgtcagatgtag |
330 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
10227875 |
tttctttgtatatttattattttgtcagatgtag |
10227908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 10499740 - 10499780
Alignment:
| Q |
288 |
tgtgcaacttttctttgtataattattattttgtcagatgt |
328 |
Q |
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|||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
10499740 |
tgtgaaacttttctttgtatatttattatttagtcagatgt |
10499780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 50828251 - 50828310
Alignment:
| Q |
48 |
cctgtgaggcgatgactatccttacttataaacacttgtttagactcatctctcatccaat |
108 |
Q |
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| T |
50828251 |
cctgtgaggtgatgactactcccacttataaacacttgtttaggc-catctctcatccaat |
50828310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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