View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14669_low_2 (Length: 221)

Name: NF14669_low_2
Description: NF14669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14669_low_2
NF14669_low_2
[»] chr4 (3 HSPs)
chr4 (77-217)||(35293076-35293210)
chr4 (1-91)||(35293227-35293317)
chr4 (113-177)||(24195121-24195185)
[»] chr1 (3 HSPs)
chr1 (92-168)||(15947749-15947825)
chr1 (92-168)||(28292536-28292612)
chr1 (77-168)||(15939385-15939478)
[»] chr2 (1 HSPs)
chr2 (77-177)||(1130579-1130677)
[»] chr7 (1 HSPs)
chr7 (83-216)||(29408057-29408187)
[»] chr8 (4 HSPs)
chr8 (83-177)||(9555233-9555327)
chr8 (77-206)||(16816196-16816322)
chr8 (128-215)||(40112807-40112895)
chr8 (83-168)||(35171049-35171133)
[»] chr5 (1 HSPs)
chr5 (84-168)||(14055744-14055827)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 35293210 - 35293076
Alignment:
Q  77 tagtcatttaagttatttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaaatgtatat 176  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35293210 tagtcatttaagttatttttgttacaaattactccttt-aagtcagaatatatctgcaccaatattctattttcattaaactcagtta-aaaatgtatat 35293113  T
Q  177 gaatgtttaattaatgttaagttggtatgtctaaattcatc 217  Q
    ||| ||    |||||||||||||||||||||||||||||||    
T  35293112 gaacgt----ttaatgttaagttggtatgtctaaattcatc 35293076  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35293317 - 35293227
Alignment:
Q  1 tggttatcattttctctcttaaaacacattaatattctaatttcatgttaattcaacattgaccaaacaccacatgtagtcatttaagtta 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  35293317 tggttatcattttctctcttaaaacacattaatattctaatttcatgttaattcaacattgaccaaataccacgtgtagtcatttaagtta 35293227  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 24195185 - 24195121
Alignment:
Q  113 tttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaaatgtatatg 177  Q
    ||||||||| || ||||| |||||| |||| ||||||| | ||||||||||||||| ||| ||||    
T  24195185 tttaagtcataaaatatcggcaccattattatattttcttcaaactcagttaaaaagtgtttatg 24195121  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 15947825 - 15947749
Alignment:
Q  92 tttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaa 168  Q
    |||||||||||||||  ||||||||||||| || |||||||||||| |||  ||||||||| |||| ||||||||||    
T  15947825 tttttgttacaaattggtccttttaagtcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaa 15947749  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 28292612 - 28292536
Alignment:
Q  92 tttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaa 168  Q
    |||||||||||||||  ||||||||||||| || |||||||||||| |||  ||||||||| |||| ||||||||||    
T  28292612 tttttgttacaaattggtccttttaagtcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaa 28292536  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 15939478 - 15939385
Alignment:
Q  77 tagtcatttaagttatttt--tgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaa 168  Q
    ||||| |||||||| ||||  |||||||||||  ||||||||| ||| || |||||||||||| |||  ||||||||| |||| ||||||||||    
T  15939478 tagtcctttaagtttttttgttgttacaaattggtccttttaaatcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaa 15939385  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 1130579 - 1130677
Alignment:
Q  77 tagtcatttaagttatttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaaatgtatat 176  Q
    ||||| |||||||| |||||||||||||||  || |||||||||| || ||||||||| || ||| ||||||| || ||||||||||||||| ||| |||    
T  1130579 tagtcctttaagtt-tttttgttacaaattggtc-ttttaagtcataaaatatctgcatcattatcctattttaatcaaactcagttaaaaagtgtttat 1130676  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 29408187 - 29408057
Alignment:
Q  83 tttaagttatttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaaatg--tatatgaat 180  Q
    |||||||| ||||||||| |||||  ||||||||||||| || |||| ||||| | ||||||| |||||| ||||||| | ||||| ||  |||||| ||    
T  29408187 tttaagtt-tttttgttataaatttgtccttttaagtcataaaatatttgcactattattctaatttcatcaaactcaatcaaaaagtgtttatatggat 29408089  T
Q  181 gtttaattaatgttaagttggtatgtctaaattcat 216  Q
    ||    |||||||||||||||| |||| ||||||||    
T  29408088 gt----ttaatgttaagttggtttgtccaaattcat 29408057  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 9555327 - 9555233
Alignment:
Q  83 tttaagttatttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaaatgtatatg 177  Q
    |||||||| |||| ||||||||||  ||||||||||||| || |||| ||||||| ||| ||| |||||| ||||||| | ||||| ||| ||||    
T  9555327 tttaagtttttttagttacaaattgatccttttaagtcataaaatatttgcaccagtatcctaatttcatcaaactcaatcaaaaagtgtttatg 9555233  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 16816322 - 16816196
Alignment:
Q  77 tagtcatttaagttatttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaaatgtatat 176  Q
    |||||||||||||| ||||||||| |||||  ||| ||||||||| || |||||| || || ||||||| |||||| ||||||  ||||||||| | |||    
T  16816322 tagtcatttaagttttttttgttataaattggtcc-tttaagtcataaaatatctacatcattattctaatttcatcaaactcgattaaaaaatatttat 16816224  T
Q  177 gaatgtttaattaatgttaagttggtatgt 206  Q
    |  ||   | ||||||||||||||||||||    
T  16816223 g--tggacatttaatgttaagttggtatgt 16816196  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 40112895 - 40112807
Alignment:
Q  128 atctgcaccaatattctattttcattaaactcagttaaaaaatgt--atatgaatgtttaattaatgttaagttggtatgtctaaattca 215  Q
    |||||||||| |||  ||||||||| ||||||| ||||||| |||  |||||||||||||||   |||||||||| || |||||||||||    
T  40112895 atctgcaccattatcttattttcatcaaactcaattaaaaagtgtttatatgaatgtttaatgt-tgttaagttgttaagtctaaattca 40112807  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 35171133 - 35171049
Alignment:
Q  83 tttaagttatttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaa 168  Q
    |||||||| |||||||||||||||  | | ||||||||| || |||| ||||||| ||| ||| |||||| ||||||||| |||||    
T  35171133 tttaagttttttttgttacaaattggt-catttaagtcataaaatatatgcaccattatcctaatttcatcaaactcagtcaaaaa 35171049  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 14055827 - 14055744
Alignment:
Q  84 ttaagttatttttgttacaaattactccttttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaa 168  Q
    ||||||| |||| ||||||||||| |||||| ||  || || || ||||||||| |||  ||||||||| |||||||||||||||    
T  14055827 ttaagtttttttagttacaaattaatcctttcaac-cataaaatttctgcaccattatcatattttcatcaaactcagttaaaaa 14055744  T

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