View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1466_high_16 (Length: 322)
Name: NF1466_high_16
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 798301 - 798597
Alignment:
| Q |
11 |
cataggaaaatataataccaagattttgtgggggagtagattgactcaaagtttggttgttccatgcgggtgtgtgtcaaatgtaagatagaaatccatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
798301 |
cataggaaaatataataccaagattttgtgggggagtagattgactcaaagtttggttgttccatgcgggtgtgtgtcaaatgtaagatagaaatccatt |
798400 |
T |
|
| Q |
111 |
ttggatggaaaagtggttgaacagcatataagtgagacgactcatataaataatgtctgaaagttttgagtgaaaatgtagtatcaaattctctatgagt |
210 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
798401 |
ttggaaggaaaagtggttgaacaacatataagtgagacgactcatataaataacgtctgaaagttttgagtgaaaatgtagtatcaaattttctatgagt |
798500 |
T |
|
| Q |
211 |
ggnnnnnnnacgtaatgtggaagtcatcatgctccatgctccactcatgatccaatagtggcatcgaagatgatggtttgcataaaaggatcatctc |
307 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
798501 |
ggtttttttacgtaatgtggaagtcatcatgctccatgctccactcatgatccaatagtggcatcgaagatgatggtttgcataaaaggatcatctc |
798597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University