View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_high_20 (Length: 307)

Name: NF1466_high_20
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_high_20
NF1466_high_20
[»] chr7 (6 HSPs)
chr7 (13-233)||(3061258-3061476)
chr7 (10-233)||(29955208-29955435)
chr7 (10-233)||(31098861-31099082)
chr7 (10-149)||(5091763-5091901)
chr7 (10-149)||(32657518-32657655)
chr7 (10-139)||(3066460-3066587)
[»] chr1 (6 HSPs)
chr1 (12-233)||(26210848-26211070)
chr1 (10-149)||(45506294-45506432)
chr1 (10-149)||(48959296-48959434)
chr1 (10-149)||(2051058-2051196)
chr1 (10-149)||(36870317-36870455)
chr1 (25-93)||(13928496-13928564)
[»] chr8 (3 HSPs)
chr8 (10-233)||(18489428-18489649)
chr8 (13-149)||(409383-409518)
chr8 (15-65)||(19958732-19958781)
[»] chr2 (13 HSPs)
chr2 (10-149)||(19820488-19820626)
chr2 (10-149)||(19840709-19840847)
chr2 (10-149)||(5000592-5000730)
chr2 (10-149)||(27999410-27999548)
chr2 (10-149)||(28090144-28090282)
chr2 (10-149)||(28096467-28096605)
chr2 (10-149)||(205037-205175)
chr2 (10-149)||(1918661-1918799)
chr2 (10-149)||(42110888-42111026)
chr2 (15-149)||(5012267-5012400)
chr2 (10-149)||(21590404-21590542)
chr2 (10-149)||(36439408-36439545)
chr2 (82-143)||(13900798-13900859)
[»] chr3 (10 HSPs)
chr3 (10-151)||(11824682-11824822)
chr3 (10-149)||(31484341-31484479)
chr3 (10-149)||(33005275-33005413)
chr3 (10-149)||(36090226-36090364)
chr3 (24-149)||(857499-857624)
chr3 (10-149)||(43508922-43509060)
chr3 (10-149)||(35713870-35714008)
chr3 (10-149)||(49565210-49565348)
chr3 (82-149)||(13457891-13457954)
chr3 (82-149)||(16648189-16648252)
[»] chr4 (4 HSPs)
chr4 (10-149)||(42345967-42346105)
chr4 (10-149)||(14147702-14147840)
chr4 (10-149)||(53286495-53286633)
chr4 (10-73)||(29362822-29362884)
[»] chr5 (4 HSPs)
chr5 (10-151)||(10038933-10039073)
chr5 (82-143)||(20108393-20108454)
chr5 (82-149)||(3611110-3611173)
chr5 (82-149)||(30093634-30093697)
[»] chr6 (4 HSPs)
chr6 (10-149)||(24457231-24457369)
chr6 (10-145)||(29370902-29371036)
chr6 (10-149)||(29373457-29373595)
chr6 (10-82)||(33006535-33006606)
[»] scaffold0160 (1 HSPs)
scaffold0160 (14-149)||(37161-37295)
[»] scaffold0374 (1 HSPs)
scaffold0374 (10-149)||(891-1029)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 3061258 - 3061476
Alignment:
Q  13 tagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatccagg 112  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  3061258 tagggggat-aaaaaaccaggtaggggatactcttgtgaaacctatcaatcaacggtatatcaaactgttcgtcacccacaaaatccaaggtaatccagg 3061356  T
Q  113 caccaagaccgattccataaaagtcacgaatcgctttactataacattttattggtacaatgctatggnnnnnnnnatatagtataatcatcactgtgac 212  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||        ||||||||||||| ||||||||||    
T  3061357 caccaaaaccgattccttaaaagtctcgaatcgctttactataacattttattagtacaatgttatgg-tttttttatatagtataatcttcactgtgac 3061455  T
Q  213 aaacgaaatttaaaattgaca 233  Q
    ||||||||||| |||||||||    
T  3061456 aaacgaaatttcaaattgaca 3061476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 29955435 - 29955208
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||  | |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  29955435 gcatagggggatcaaaagtc-gggtaggggatattcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaagataatcc 29955337  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgctttactataacattttattggtacaatgctatggnnnnnnnna-----tatagtataatcatc 204  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||        |     ||||||||||||||     
T  29955336 aagcaccaagaccgattccgtaaaagtcacgaatcgctttactataacattttattagtacaacgctatggttttttttatatagtatagtataatcatt 29955237  T
Q  205 actgtgacaaacgaaatttaaaattgaca 233  Q
    ||||||||||||||||||| |||||||||    
T  29955236 actgtgacaaacgaaatttgaaattgaca 29955208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 31099082 - 31098861
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||| ||||||||||  ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||     
T  31099082 gcatagagggatcaaaag-ccgggtatgggatactcttgtgaaacctatcagtcaaccgtatatcaaactgtctgtcacccacaaaaaccaaggtaatct 31098984  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgctttactataacattttattggtacaatgctatggnnnnnnnnatatagtataatcatcactgt 209  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| | | ||  ||||||        ||||||||||||||| |||||    
T  31098983 aggcaccaagaccgattctgtaaaagtcacgaatcgctttactataacattttattaggataacactatgg-tttttttatatagtataatcatgactgt 31098885  T
Q  210 gacaaacgaaatttaaaattgaca 233  Q
    |||||||||||||| |||||||||    
T  31098884 gacaaacgaaatttgaaattgaca 31098861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 5091901 - 5091763
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  5091901 gcatagggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattc 5091803  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  5091802 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 5091763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 32657655 - 32657518
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||      
T  32657655 gcatagggggatcaaaaa--cgggtaggggatactcttgtgaaacctatcagtcaactgtgtatcaaactgtccgtcaccaacaaaaaccaaggtaattt 32657558  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  32657557 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 32657518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 3066460 - 3066587
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  3066460 gcataggaggatcaaaa-accgggtaggggatactcttgtgaaacctatcagtcaacggtatatcaaactgtctgtcacccacaaaaatcaaggtaatcc 3066558  T
Q  110 aggcaccaagaccgattccataaaagtcac 139  Q
    |  |||||||||||||||  ||||||||||    
T  3066559 a-acaccaagaccgattcggtaaaagtcac 3066587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 26211070 - 26210848
Alignment:
Q  12 atagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatccag 111  Q
    |||||||||||||||  ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  26211070 atagggggatcaaaag-ccgggtaagggatactcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccataaaaaccaagataatccag 26210972  T
Q  112 gcaccaagaccgattccataaaagtcacgaatcgctttactataacattttattggtacaatgctatgg--nnnnnnnnatatagtataatcatcactgt 209  Q
    | ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||          |||||||||||||||||||||    
T  26210971 gtaccaagaccgattccgtaaaattcacgaatcgctttactataacattttattagtacaacgctatggttttttttttatatagtataatcatcactgt 26210872  T
Q  210 gacaaacgaaatttaaaattgaca 233  Q
    |||||||||||||| |||||||||    
T  26210871 gacaaacgaaatttgaaattgaca 26210848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 45506294 - 45506432
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  45506294 gcatagggggatcaaaa-accgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattc 45506392  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  45506393 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 45506432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 48959434 - 48959296
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  48959434 gcatagggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattc 48959336  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  48959335 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 48959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 2051058 - 2051196
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  2051058 gcatagggggatcaaaa-accgggtaggggatattcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 2051156  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
     |||||||||| ||||||| ||||||||||||||||||||    
T  2051157 gggcaccaagatcgattccgtaaaagtcacgaatcgcttt 2051196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 36870317 - 36870455
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  36870317 gcatagggggatcaaaa-accgggtaggggatattcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 36870415  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
     |||||||||| ||||||| ||||||||||||||||||||    
T  36870416 gggcaccaagatcgattccgtaaaagtcacgaatcgcttt 36870455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 13928496 - 13928564
Alignment:
Q  25 aaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccaca 93  Q
    |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  13928496 aaaatcgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcacccaca 13928564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 18489428 - 18489649
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18489428 gcataaggggatcaaaa-accgggtaggggatactcttgtgaaacctattagtcaacggtatatcaaactgtcagtcacccacaaaaaccaaggtaatcc 18489526  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgctttactataacattttattggtacaatgctatggnnnnnnnnatatagtataatcatcactgt 209  Q
    | | ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||  ||||||        ||||||||||||||||||| |    
T  18489527 aagaaccaagaccgattccataaaagtcacgaatcactttactatatcattttattagtacaacactatgg-tttttttatatagtataatcatcactct 18489625  T
Q  210 gacaaacgaaatttaaaattgaca 233  Q
    |||||||||||| | |||||||||    
T  18489626 gacaaacgaaatatgaaattgaca 18489649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 409383 - 409518
Alignment:
Q  13 tagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatccagg 112  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||    
T  409383 tagggggatcaaaaa-ccaggtaggggatactcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaattcagg 409481  T
Q  113 caccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  409482 caccaagatcgattccgtaaaagtcacgaatcgcttt 409518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 19958781 - 19958732
Alignment:
Q  15 gggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaa 65  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  19958781 gggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcaatcaa 19958732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 19820626 - 19820488
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  19820626 gcatagggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatcc 19820528  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  19820527 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 19820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 19840847 - 19840709
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  19840847 gcatagggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatcc 19840749  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  19840748 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 19840709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 5000592 - 5000730
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  5000592 gcatagggggatcaaaaa-ccaggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatcc 5000690  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  5000691 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 5000730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 27999410 - 27999548
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| | || ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27999410 gcatagggggatcaaaaatcagg-taggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 27999508  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  27999509 aggcaccaagaccgattctgtaaaagtcacgaatcgcttt 27999548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 28090144 - 28090282
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| | || ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28090144 gcatagggggatcaaaaatcagg-taggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 28090242  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  28090243 aggcaccaagaccgattctgtaaaagtcacgaatcgcttt 28090282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 28096467 - 28096605
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| | || ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28096467 gcatagggggatcaaaaatcagg-taggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 28096565  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  28096566 aggcaccaagaccgattctgtaaaagtcacgaatcgcttt 28096605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 205175 - 205037
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| |    
T  205175 gcatagggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtgtatctaactgtccgtcaccaacaaaaaccaaggtaattc 205077  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  205076 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 205037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 1918661 - 1918799
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||| ||||||| | |||||| ||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  1918661 gcataggggggtcaaaaatc-gggtagaggatactcttgtgaaacctgtcagtcaaccgtatatcaaattgtccgtcacccacaaaaaccaaggtaatcc 1918759  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  1918760 aggcaccaagaccgattccgtaaaagtcacgaatcgcttt 1918799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 42110888 - 42111026
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  42110888 gcatagggggatcaaaaa-ccaggtaggggatactcgtgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatcc 42110986  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||| ||||||||||    
T  42110987 aggcaccaagatcgattccgtaaaagtcaagaatcgcttt 42111026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 5012267 - 5012400
Alignment:
Q  15 gggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggca 114  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  5012267 gggggatcaaaaa-ccaggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatccaggca 5012365  T
Q  115 ccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||| ||||||| ||||||||||||||||||||    
T  5012366 ccaagatcgattccgtaaaagtcacgaatcgcttt 5012400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 21590404 - 21590542
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  21590404 gcataaggggatcaaaa-accgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattc 21590502  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||  |||||||||| |||||||||    
T  21590503 aggcaccaagatcgattctgtaaaagtcacaaatcgcttt 21590542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 36439408 - 36439545
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| || ||||||| ||||||||| |||||||||||||||||  |||||||||||||| |||||| ||||||||||||||||| |    
T  36439408 gcatagggggatcaaaaa-ccaggtaggg-atactcttgtgaaacctatcagtcaactatatatcaaactgtctgtcaccaacaaaaaccaaggtaattc 36439505  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||| ||||    
T  36439506 aggcaccaagatcgattccgtaaaagtcacgaatcacttt 36439545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 13900859 - 13900798
Alignment:
Q  82 ccgtcacccacaaaaaccaaggtaatccaggcaccaagaccgattccataaaagtcacgaat 143  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13900859 ccgtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaat 13900798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 11824822 - 11824682
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  11824822 gcatagggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatcc 11824724  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgctttac 151  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  11824723 aggcaccaagatcgattccgtaaaagtcaagaatcgctttac 11824682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 31484479 - 31484341
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31484479 gcatagggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcacccacaaaaaccaaggtaatcc 31484381  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||||||||  |||||| ||||||||||||||||||||    
T  31484380 aggcaccaagattgattccgtaaaagtcacgaatcgcttt 31484341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 33005275 - 33005413
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  33005275 gcatagggggatcaaaa-accgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatcc 33005373  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||| ||||||||||    
T  33005374 aggcaccaagatcgattccgtaaaagtcaagaatcgcttt 33005413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 36090226 - 36090364
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  36090226 gcatagggggatcaaaa-accgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattc 36090324  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  36090325 aggcaccaagatcgattctataaaagtcacgaatcgcttt 36090364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 857624 - 857499
Alignment:
Q  24 aaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggcaccaagaccg 123  Q
    |||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  857624 aaaaactgggtagggtatactcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggcaccaagaccg 857525  T
Q  124 attccataaaagtcacgaatcgcttt 149  Q
    ||| | ||||||||||||||||||||    
T  857524 atttcgtaaaagtcacgaatcgcttt 857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 43508922 - 43509060
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  43508922 gcataggggggtcaaaa-accgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcgctaacaaaaaccaaggtaatcc 43509020  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  43509021 aggcaccaagatcgattccataaaattcacgaatcgcttt 43509060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 35714008 - 35713870
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |    
T  35714008 gcatagggggatcaaaaa-ccgggttggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaacaaaggtaattc 35713910  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    || |||||||| ||||||| ||||||||||||||||||||    
T  35713909 agacaccaagatcgattccgtaaaagtcacgaatcgcttt 35713870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 49565210 - 49565348
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |    
T  49565210 gcatagggggatcaaaa-accgggtaggggatactcttgtgaaacctatcagacaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattc 49565308  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| |||||   ||||||||||||||||||||    
T  49565309 aggcaccaagatcgattgtgtaaaagtcacgaatcgcttt 49565348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 13457891 - 13457954
Alignment:
Q  82 ccgtcacccacaaaaaccaaggtaatccaggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||||||||||||||||||||    |||||||||||| ||||||| |||||||||||||| |||||    
T  13457891 ccgtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgcttt 13457954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 16648252 - 16648189
Alignment:
Q  82 ccgtcacccacaaaaaccaaggtaatccaggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||||||||||||||||||||    |||||||||||| ||||||| |||||||||||||| |||||    
T  16648252 ccgtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgcttt 16648189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 42346105 - 42345967
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  42346105 gcataaggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatcc 42346007  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  42346006 aggcaccaagatcgattccgtaaaagtcacgaatcgcttt 42345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 14147702 - 14147840
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  14147702 gcatagggggatcaaaaa-ccaggtaggggatactcttgtgaaacctatcagtcaagtgtatatcaaactgtccatcacccacaaaaaccaaggtaatcc 14147800  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||| ||||||||||    
T  14147801 aggcaccaagatcgattccgtaaaagtcatgaatcgcttt 14147840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 53286633 - 53286495
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| | |||||||||||||||||| |||| |||||||||||| | |||||||||||||| ||||| |||||||| ||||||||||    
T  53286633 gcatagggggatcaaaaa-ctgggtaggggatactcttgtgaaagctatcagtcaactgcatatcaaactgtccttcaccaacaaaaactaaggtaatcc 53286535  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||| ||||||||||||||    
T  53286534 aggcaccaagatcgattccgtaaaattcacgaatcgcttt 53286495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 29362822 - 29362884
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatat 73  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29362822 gcatagggggat-aaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatat 29362884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 10039073 - 10038933
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||    
T  10039073 gcataggggggtcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactatatatcaaactgtccgtcatcaacaaaaaccaaggtaatcc 10038975  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgctttac 151  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  10038974 aggcaccaagatcgattccgtaaaagtcaagaatcgctttac 10038933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 20108393 - 20108454
Alignment:
Q  82 ccgtcacccacaaaaaccaaggtaatccaggcaccaagaccgattccataaaagtcacgaat 143  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20108393 ccgtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaat 20108454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 3611110 - 3611173
Alignment:
Q  82 ccgtcacccacaaaaaccaaggtaatccaggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||||||||||||||||||||    |||||||||||| ||||||| |||||||||||||| |||||    
T  3611110 ccgtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgcttt 3611173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 30093634 - 30093697
Alignment:
Q  82 ccgtcacccacaaaaaccaaggtaatccaggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||||||||||||||||||||    |||||||||||| ||||||| |||||||||||||| |||||    
T  30093634 ccgtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgcttt 30093697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 24457369 - 24457231
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||    
T  24457369 gcataggaggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactatccgtcaccaacaaaaacaaaggtaatcc 24457271  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||| ||||||||||    
T  24457270 aggcaccaagatcgattccgtaaaagtcaagaatcgcttt 24457231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 29370902 - 29371036
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  29370902 gcatagggggatcaaaa-accgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtctgtcaccaacaaaaaccaaggtaatcc 29371000  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcg 145  Q
    ||||||||||| | ||||| ||||||||| ||||||    
T  29371001 aggcaccaagatcaattccgtaaaagtcatgaatcg 29371036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 29373457 - 29373595
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||    
T  29373457 gcatagggggatcaaaaa-ctgggtatgggatactcttgtgaaacctatcagtcaactgtatatcaaaatgtctgtcaccaacaaaaaccaaggtaatcc 29373555  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||| ||||||| ||||||||| ||||| ||||    
T  29373556 aggcaccaagatcgattccgtaaaagtcaagaatcacttt 29373595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 33006535 - 33006606
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtc 82  Q
    |||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||||||||||||||    
T  33006535 gcatagggggatcaaaaatc-gggtaagggatactcttgtgaaacctatcagtcaactgtatatcaaactgtc 33006606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 37295 - 37161
Alignment:
Q  14 agggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggc 113  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||||| ||||    
T  37295 agggggatcaaaaa-ccgggtaggggatactcttgtgaaacctatcagtcaaccgtatatcaaactatctatcacccacaaaaaccaaggtaatctaggc 37197  T
Q  114 accaagaccgattccataaaagtcacgaatcgcttt 149  Q
    |||||||||||||   ||||||||| ||||||||||    
T  37196 accaagaccgattgagtaaaagtcaggaatcgcttt 37161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 1029 - 891
Alignment:
Q  10 gcatagggggatcaaaaaaccgggtaggggatactcttgcgaaacctatcagtcaacggtatatcaaactgtccgtcacccacaaaaaccaaggtaatcc 109  Q
    |||||||||||||||||| | |||||||||||||||||  |||||||||||||||   |||||||||| ||||| |||||  ||||||||||||||||||    
T  1029 gcatagggggatcaaaaa-ctgggtaggggatactcttatgaaacctatcagtcagtcgtatatcaaattgtccctcaccatcaaaaaccaaggtaatcc 931  T
Q  110 aggcaccaagaccgattccataaaagtcacgaatcgcttt 149  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  930 aggcaccaagaccgattctgtaaaagtcacgaatcgcttt 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University