View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_22 (Length: 279)
Name: NF1466_high_22
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 79 - 261
Target Start/End: Complemental strand, 43376706 - 43376524
Alignment:
| Q |
79 |
gttattagatgcatatcagtatcatgtcgatacaaacgtgattagatcaacaatgggtgctgcatagatgtaacacaagttacacatcatgagacttgga |
178 |
Q |
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| T |
43376706 |
gttattagatgcatatcagtatcatgtcgatacaaacgtgattagatcaacaatgggtgctacatagatgtaacacaagttacacatcatgagacttgga |
43376607 |
T |
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| Q |
179 |
aatgtaacaggttttgaagatcaattcatttcaagcaaattattttgaatcacaaaattgaatttttcaaaacaggggataac |
261 |
Q |
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| T |
43376606 |
aatgtaacaggttttgaagatcactttatttcaagcaaattattttgaatcacaaaattgaatttttcaaaacaggggataac |
43376524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 43376753 - 43376708
Alignment:
| Q |
12 |
atgaacactgacacagatgataatttgagaaaataaattaattgat |
57 |
Q |
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| T |
43376753 |
atgaacactgacacggatgataatttgagaaaataaattaattgat |
43376708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 20980997 - 20980957
Alignment:
| Q |
16 |
acactgacacagatgataatttgagaaaataaattaattga |
56 |
Q |
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| T |
20980997 |
acaccgacatagatgataatttgagaaaatgaattaattga |
20980957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 32102912 - 32102884
Alignment:
| Q |
28 |
atgataatttgagaaaataaattaattga |
56 |
Q |
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| T |
32102912 |
atgataatttgagaaaataaattaattga |
32102884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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