View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_23 (Length: 277)
Name: NF1466_high_23
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 34083794 - 34083913
Alignment:
| Q |
144 |
cctctggaatctggatgaggccttcaacaattctctatattcctctttttgtttgtatataaaccatctctaaaaacaaacaagagaagaccctgtcatg |
243 |
Q |
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| T |
34083794 |
cctctggaatctggatgagaccttcaacaattctctatattcctcttttcgtttgtatacaactcatctctaaaaacaaacaagagaaggccctgtcgtg |
34083893 |
T |
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| Q |
244 |
ctgcattggttagtcacagg |
263 |
Q |
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| T |
34083894 |
ctgcattggttagtcacagg |
34083913 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 34083688 - 34083756
Alignment:
| Q |
77 |
aataacaagttgtttcaactgagaatttagagcagtactgacatttatttacaacaacccataaactcc |
145 |
Q |
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| T |
34083688 |
aataacgagctgtttcaactgagaatttagaggagcactgacattcatttttagcaacccataaactcc |
34083756 |
T |
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