View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_high_24 (Length: 269)

Name: NF1466_high_24
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_high_24
NF1466_high_24
[»] chr7 (3 HSPs)
chr7 (1-222)||(33885461-33885682)
chr7 (179-240)||(46945990-46946051)
chr7 (175-215)||(6825026-6825066)
[»] chr4 (5 HSPs)
chr4 (86-164)||(21952933-21953011)
chr4 (89-128)||(6978972-6979011)
chr4 (180-226)||(53034726-53034772)
chr4 (86-130)||(29467631-29467675)
chr4 (86-130)||(35507464-35507508)
[»] chr3 (2 HSPs)
chr3 (87-135)||(27290909-27290957)
chr3 (86-132)||(31403164-31403210)
[»] chr2 (4 HSPs)
chr2 (88-164)||(31739981-31740057)
chr2 (175-213)||(43529780-43529818)
chr2 (127-164)||(1160805-1160842)
chr2 (134-162)||(11307286-11307314)
[»] chr1 (4 HSPs)
chr1 (175-239)||(12564421-12564485)
chr1 (86-132)||(20713673-20713719)
chr1 (86-163)||(44936610-44936687)
chr1 (86-114)||(11639423-11639451)
[»] scaffold0153 (2 HSPs)
scaffold0153 (127-164)||(6559-6596)
scaffold0153 (127-164)||(13579-13616)
[»] chr6 (1 HSPs)
chr6 (183-240)||(26559169-26559226)
[»] chr8 (1 HSPs)
chr8 (86-114)||(43168517-43168545)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33885461 - 33885682
Alignment:
Q  1 tttcatgggtgaatggtggtggtgatgactataaacttcattttgttgttaaggaacctttaataggtatggtagttgtaccatttccataagctgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33885461 tttcatgggtgaatggtggtggtgatgactataaacttcattttgttgttaaggaacctttaataggtatggtagttgtaccatttccataagctgtttt 33885560  T
Q  101 tagcttattttcatgaactctttaggatagctaatagcttttatgaaaatagtttgactttattattggcttgattgaattgacttatttgagcttacct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  33885561 tagcttattttcatgaactctttaggatagctaatagcttttatgaaaatagtttgactttattattatcttgattgaattgacttatttgagcttacct 33885660  T
Q  201 agtggtataagcattcgtgtta 222  Q
    |||||||||||||||| |||||    
T  33885661 agtggtataagcattcatgtta 33885682  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 46946051 - 46945990
Alignment:
Q  179 attgacttatttgagcttacctagtggtataagcattcgtgttactgtttggaagagcttat 240  Q
    ||||||||||||||||||| ||| ||| |||| |||||||| |||||||| ||||| |||||    
T  46946051 attgacttatttgagcttagctactggcataaacattcgtggtactgtttagaagaacttat 46945990  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 6825066 - 6825026
Alignment:
Q  175 ttgaattgacttatttgagcttacctagtggtataagcatt 215  Q
    ||||||||||||||||||||||| ||| || ||||||||||    
T  6825066 ttgaattgacttatttgagcttaactactgctataagcatt 6825026  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 21953011 - 21952933
Alignment:
Q  86 tccataagctgtttttagcttattttcatgaactctttaggatagctaatagcttttatgaaaatagtttgactttatt 164  Q
    ||||||| |||||||||| |||||| | | | |||| |||||||||| ||||||| |||||||| | ||||||||||||    
T  21953011 tccataacctgtttttagtttatttccttaagctctataggatagcttatagcttatatgaaaacaatttgactttatt 21952933  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 6978972 - 6979011
Alignment:
Q  89 ataagctgtttttagcttattttcatgaactctttaggat 128  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  6978972 ataagctgttttcagcttattttcataaactctttaggat 6979011  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 53034726 - 53034772
Alignment:
Q  180 ttgacttatttgagcttacctagtggtataagcattcgtgttactgt 226  Q
    |||||||||||||||||| ||| || ||||||||||||||| |||||    
T  53034726 ttgacttatttgagcttatctactgatataagcattcgtgtgactgt 53034772  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 29467631 - 29467675
Alignment:
Q  86 tccataagctgtttttagcttattttcatgaactctttaggatag 130  Q
    ||||||||||||||| ||||||||| ||| |||||| ||||||||    
T  29467631 tccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 35507464 - 35507508
Alignment:
Q  86 tccataagctgtttttagcttattttcatgaactctttaggatag 130  Q
    |||||||||| ||||||||||| |||||| | |||||||||||||    
T  35507464 tccataagctatttttagcttactttcataagctctttaggatag 35507508  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 27290909 - 27290957
Alignment:
Q  87 ccataagctgtttttagcttattttcatgaactctttaggatagctaat 135  Q
    |||||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  27290909 ccataagctgttttcagcttatttccatgaactctgcaggatagctaat 27290957  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 31403210 - 31403164
Alignment:
Q  86 tccataagctgtttttagcttattttcatgaactctttaggatagct 132  Q
    ||||||||||||||| ||||||||  |||||||||| ||||||||||    
T  31403210 tccataagctgttttcagcttattaccatgaactctctaggatagct 31403164  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 31739981 - 31740057
Alignment:
Q  88 cataagctgtttttagcttattttcatgaactctttaggatagctaatagcttttatgaaaatagtttgactttatt 164  Q
    ||||||||||||| || |||||| ||| | |||| ||| | | || ||||||| |||||||||||||||||||||||    
T  31739981 cataagctgttttcagattatttccataagctctctagaacaacttatagcttatatgaaaatagtttgactttatt 31740057  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 43529780 - 43529818
Alignment:
Q  175 ttgaattgacttatttgagcttacctagtggtataagca 213  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  43529780 ttgaattgacttatttgagcttatctattggtataagca 43529818  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 1160805 - 1160842
Alignment:
Q  127 atagctaatagcttttatgaaaatagtttgactttatt 164  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  1160805 atagcttatagcttatatgaaaatagtttgactttatt 1160842  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 11307314 - 11307286
Alignment:
Q  134 atagcttttatgaaaatagtttgacttta 162  Q
    |||||||||||||||||||||||||||||    
T  11307314 atagcttttatgaaaatagtttgacttta 11307286  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 12564421 - 12564485
Alignment:
Q  175 ttgaattgacttatttgagcttacctagtggtataagcattcgtgttactgtttggaagagctta 239  Q
    |||||||||||||||||||||||  || || |||||||| | |||| ||||||||| ||||||||    
T  12564421 ttgaattgacttatttgagcttatatactgatataagcacttgtgtgactgtttgggagagctta 12564485  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 20713719 - 20713673
Alignment:
Q  86 tccataagctgtttttagcttattttcatgaactctttaggatagct 132  Q
    ||||||||||||||||| ||||||||||| | |||||||| ||||||    
T  20713719 tccataagctgtttttatcttattttcataagctctttagtatagct 20713673  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 44936610 - 44936687
Alignment:
Q  86 tccataagctgtttttagcttattttcatgaactctttaggatagctaatagcttttatgaaaatagtttgactttat 163  Q
    |||||| ||||||||  || ||||| ||| | ||||| | ||||| | ||||||| ||||||||||||||||||||||    
T  44936610 tccatatgctgttttctgcctatttccataagctcttcaagatagattatagcttatatgaaaatagtttgactttat 44936687  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 11639423 - 11639451
Alignment:
Q  86 tccataagctgtttttagcttattttcat 114  Q
    |||||||||||||||||||||||||||||    
T  11639423 tccataagctgtttttagcttattttcat 11639451  T

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Target: scaffold0153 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 6559 - 6596
Alignment:
Q  127 atagctaatagcttttatgaaaatagtttgactttatt 164  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  6559 atagcttatagcttatatgaaaatagtttgactttatt 6596  T

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Target: scaffold0153; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 13579 - 13616
Alignment:
Q  127 atagctaatagcttttatgaaaatagtttgactttatt 164  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  13579 atagcttatagcttatatgaaaatagtttgactttatt 13616  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 26559169 - 26559226
Alignment:
Q  183 acttatttgagcttacctagtggtataagcattcgtgttactgtttggaagagcttat 240  Q
    ||||||||||| ||||||| ||| ||||||||| |||  ||||||||||||| |||||    
T  26559169 acttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttat 26559226  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 43168517 - 43168545
Alignment:
Q  86 tccataagctgtttttagcttattttcat 114  Q
    |||||||||||||||||||||||||||||    
T  43168517 tccataagctgtttttagcttattttcat 43168545  T

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