View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_high_26 (Length: 261)

Name: NF1466_high_26
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_high_26
NF1466_high_26
[»] chr6 (6 HSPs)
chr6 (1-261)||(10079152-10079413)
chr6 (1-217)||(10083396-10083626)
chr6 (1-140)||(10095926-10096066)
chr6 (133-238)||(10077508-10077613)
chr6 (146-242)||(18344924-18345020)
chr6 (201-261)||(10095822-10095882)
[»] chr5 (4 HSPs)
chr5 (146-257)||(27882417-27882528)
chr5 (146-257)||(37374267-37374378)
chr5 (146-257)||(8427360-8427471)
chr5 (146-257)||(14190765-14190876)
[»] chr8 (5 HSPs)
chr8 (146-257)||(7823164-7823275)
chr8 (146-257)||(25217340-25217451)
chr8 (146-257)||(30326799-30326910)
chr8 (146-257)||(33861087-33861198)
chr8 (174-257)||(25207849-25207932)
[»] chr7 (3 HSPs)
chr7 (146-257)||(12784777-12784888)
chr7 (146-257)||(7038053-7038164)
chr7 (146-257)||(12779923-12780034)
[»] chr4 (3 HSPs)
chr4 (146-257)||(13345269-13345380)
chr4 (146-257)||(35857240-35857351)
chr4 (146-242)||(617545-617641)
[»] chr2 (6 HSPs)
chr2 (146-257)||(41918972-41919083)
chr2 (146-242)||(27194639-27194735)
chr2 (146-242)||(27844453-27844549)
chr2 (146-257)||(35611798-35611909)
chr2 (146-257)||(39441034-39441145)
chr2 (146-190)||(19816955-19816998)
[»] chr3 (2 HSPs)
chr3 (146-256)||(52919361-52919471)
chr3 (146-257)||(41763069-41763180)
[»] scaffold0356 (1 HSPs)
scaffold0356 (146-257)||(15001-15112)
[»] chr1 (3 HSPs)
chr1 (146-257)||(2331321-2331432)
chr1 (146-241)||(6309769-6309864)
chr1 (146-242)||(48234178-48234274)
[»] scaffold0073 (1 HSPs)
scaffold0073 (147-187)||(33339-33379)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 10079413 - 10079152
Alignment:
Q  1 gcttcaacaacttgacaagaactagtacattgtaagccgacacacatcagacaaacatagatcttgttaattctcttagattgttaaacttgcttttaat 100  Q
    |||||||||||||||| |||||||| ||||||||||  ||||||||| ||||||||||| ||||| | ||||||||||||||||| || || ||||||||    
T  10079413 gcttcaacaacttgacgagaactagcacattgtaagttgacacacattagacaaacatatatcttttcaattctcttagattgttgaattttcttttaat 10079314  T
Q  101 ttcctttttgctgtaatttg-tttttaaactttgcacattatcttgatatcttgattaatttgttcacatcttttgtttattaattgattagctttccac 199  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||    
T  10079313 ttcctttttgctgtaattttctttttaaactttgcacattatcttgatatcttgattaatttgttcacatcttctatttattaattgattaacttttcac 10079214  T
Q  200 attatcttgattagtttccaatcatgacatcattctgtagcagctccaatatctatttcttc 261  Q
    |||||||| ||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||    
T  10079213 attatctttattagtttccattcatgaaatcattctgtagcagttcctatatctatttcttc 10079152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10083626 - 10083396
Alignment:
Q  1 gcttcaacaacttgacaagaactagtacattgtaagccgacacacatcagacaaacatagatcttgttaattctcttagattgttaaacttgcttttaat 100  Q
    |||||||||||| ||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||    
T  10083626 gcttcaacaactcgacgagaactagcacattgtaagccgatacacatcagacaaacatatatcttgttatttctcttagattgttgaactttcttttaat 10083527  T
Q  101 ttcctttttgctgtaa-tttgttttta-------------aactttgcacattatcttgatatcttgattaatttgttcacatcttttgtttattaattg 186  Q
    |||||||||||| ||| ||| ||||||             ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  10083526 ttcctttttgctataattttctttttaaaatttgaacattaactttgtacattattttgataccttgattaatttgttcacatcttgtgtttattaattg 10083427  T
Q  187 attagctttccacattatcttgattagtttc 217  Q
    |||| |||| |||||||||||||||||||||    
T  10083426 attaacttttcacattatcttgattagtttc 10083396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 10096066 - 10095926
Alignment:
Q  1 gcttcaacaacttgacaagaactagtacattgtaagccgacacacatcagacaaacatagatcttgttaattctcttagattgttaaacttgcttttaat 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||    
T  10096066 gcttcaacaacttgacaagaactagcacattgtaagccgacacacatcagacaaacatatatcttattaattctcttagattgttgaactttcttttaat 10095967  T
Q  101 ttcctttttgctgtaa-tttgtttttaaactttgcacatta 140  Q
    |||||||||||||||| ||| |||||||| |||||||||||    
T  10095966 ttcctttttgctgtaattttctttttaaaatttgcacatta 10095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 10077613 - 10077508
Alignment:
Q  133 gcacattatcttgatatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcat 232  Q
    ||||||||| ||||||||| ||||||||||||| |||||| ||||||||||| ||||| |||| |||||||| |||||||||||||  ||||||||||||    
T  10077613 gcacattattttgatatctcgattaatttgttcgcatcttctgtttattaatcgattaacttttcacattattttgattagtttccgttcatgacatcat 10077514  T
Q  233 tctgta 238  Q
    | ||||    
T  10077513 tatgta 10077508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 18345020 - 18344924
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcag 242  Q
    |||||||||||||||||||||||| || ||||  |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| ||||||||    
T  18345020 atatcttgattaatttgttcacattttctgttctttaattgattaatttttcacgttatctagattagtgagcattcatgacatcattatgtagcag 18344924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 10095882 - 10095822
Alignment:
Q  201 ttatcttgattagtttccaatcatgacatcattctgtagcagctccaatatctatttcttc 261  Q
    ||||||| ||||||||||| ||||||||||||| ||| || | ||| ||||||||||||||    
T  10095882 ttatcttaattagtttccattcatgacatcattatgttgctgttcctatatctatttcttc 10095822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 27882528 - 27882417
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| |||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  27882528 atatcttgattaatttgttcacattttttgttttttaattgattaccttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 27882429  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  27882428 ctatatctattt 27882417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 37374378 - 37374267
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  37374378 atatcttgattaatttgttcacattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 37374279  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  37374278 ctatatctattt 37374267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 8427360 - 8427471
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||| ||| || | ||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  8427360 atatcttgattaatttgttcccattttctattttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 8427459  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  8427460 ctatatctattt 8427471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 14190765 - 14190876
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||  |||||||||||  ||| ||| |||||| ||||| |   || ||||||||||||| |||||||| |     
T  14190765 atatcttgattaatttgttcacattttctgttctttaattgattaatttttcacgttatctagattaatgagcattcatgacatcattttgtagcagttt 14190864  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  14190865 ctatatctattt 14190876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 7823275 - 7823164
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  7823275 atatcttgattaatttgttcacattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 7823176  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  7823175 ctatatctattt 7823164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 25217340 - 25217451
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||| ||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  25217340 atatcttgattaatttgttcccattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 25217439  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  25217440 ctatatctattt 25217451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 30326910 - 30326799
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||  || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  30326910 atatcttgattaatttgttcacagtttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 30326811  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  30326810 ctatatctattt 30326799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 33861087 - 33861198
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    ||||||||||||||||||||||||  | ||||  |||||||||||  ||  ||| ||||||  ||||||   || ||||||||||||| |||||||| ||    
T  33861087 atatcttgattaatttgttcacattatctgttctttaattgattaatttgtcacgttatctatattagtgagcattcatgacatcattttgtagcagttc 33861186  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  33861187 ctatatctattt 33861198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 25207849 - 25207932
Alignment:
Q  174 tgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctccaatatctattt 257  Q
    ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||| ||||||||||    
T  25207849 tgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttcctatatctattt 25207932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 12784777 - 12784888
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  12784777 atatcttgattaatttgttcacattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 12784876  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  12784877 ctatatctattt 12784888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 7038164 - 7038053
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| | |||||| ||    
T  7038164 atatcttgattaatttgttcacattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttatagcagttc 7038065  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  7038064 ctatatctattt 7038053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 12779923 - 12780034
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||| ||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  12779923 atatcttgattaatttgttcccattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 12780022  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  12780023 ctatatctattt 12780034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 13345380 - 13345269
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||| ||| ||    
T  13345380 atatcttgattaatttgttcacattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtatcagttc 13345281  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  13345280 ctatatctattt 13345269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 35857351 - 35857240
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||| ||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  35857351 atatcttgattaatttgttcccattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 35857252  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  35857251 ctatatctattt 35857240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 617545 - 617641
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcag 242  Q
    ||||||||||||||||| |||||| || | ||  |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| ||||||||    
T  617545 atatcttgattaatttgatcacattttctattctttaattgattaatttttcacgttatctagattagtgagcattcatgacatcattttgtagcag 617641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 41918972 - 41919083
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||| ||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  41918972 atatcttgattaatttgttcccattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 41919071  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  41919072 ctatatctattt 41919083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 27194735 - 27194639
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcag 242  Q
    |||||||||||||||||||||||| || ||||  ||||||||||   ||| ||| |||||| |||||||   || ||||||||||||||||||||||    
T  27194735 atatcttgattaatttgttcacattttctgttctttaattgattcttttttcacgttatctagattagtgagcattcatgacatcattctgtagcag 27194639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 27844549 - 27844453
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcag 242  Q
    |||||||||||||||||||||||| || ||||  ||||||||||   ||| ||| |||||| |||||||   || ||||||||||||| ||||||||    
T  27844549 atatcttgattaatttgttcacattttctgttctttaattgatttttttttcacgttatctagattagtgagcattcatgacatcattttgtagcag 27844453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 35611909 - 35611798
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||  |||||||||||  ||| ||| |||| | ||||| |   || ||||||||||||| |||||||| |     
T  35611909 atatcttgattaatttgttcacattttctgttctttaattgattaatttttcacgttatttagattaatgagcattcatgacatcattttgtagcagttt 35611810  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  35611809 ctatatctattt 35611798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 39441034 - 39441145
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||  ||| |||||||  ||| ||| ||||||  ||||||   || ||||||||||||| |||||||| |     
T  39441034 atatcttgattaatttgttcacattttctgttctttatttgattaatttttcacgttatctaaattagtgagcattcatgacatcattttgtagcagttt 39441133  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  39441134 ctatatctattt 39441145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 19816955 - 19816998
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgatta 190  Q
    |||||||||||||||||||||||| ||||| || |||||||||||    
T  19816955 atatcttgattaatttgttcacattttttg-ttcttaattgatta 19816998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 52919471 - 52919361
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || |||||||| |||| |||||||| ||    
T  52919471 atatcttgattaatttgttcacattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacaacattttgtagcagttc 52919372  T
Q  246 caatatctatt 256  Q
    | |||||||||    
T  52919371 ctatatctatt 52919361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 41763069 - 41763180
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    ||||||||||||||||||||||||  | ||||  |||||||||||  ||  ||| ||||||  ||||||   || ||||||||||||| |||||||| ||    
T  41763069 atatcttgattaatttgttcacattatctgttctttaattgattaatttgtcacgttatctatattagtgagcattcatgacatcattttgtagcagttc 41763168  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  41763169 ctatatctattt 41763180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 15001 - 15112
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    ||||||||||||||||||||||||  | ||||  |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  15001 atatcttgattaatttgttcacattatctgttctttaattgattaatttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 15100  T
Q  246 caatatctattt 257  Q
    | ||||||||||    
T  15101 ctatatctattt 15112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 2331432 - 2331321
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcagctc 245  Q
    |||||||||||||||||||| ||| || ||||  |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||| ||    
T  2331432 atatcttgattaatttgttcgcattttatgttctttaattgattaatttttcacgttatctagattagtgagcattcatgacatcattttgtagcagttc 2331333  T
Q  246 caatatctattt 257  Q
    ||||| ||||||    
T  2331332 caataactattt 2331321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 6309769 - 6309864
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagca 241  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| |||||||    
T  6309769 atatcttgattaatttgttcacattttctgttttttaattgattactttttcacgttatctagattagtgagcattcatgacatcattttgtagca 6309864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 48234274 - 48234178
Alignment:
Q  146 atatcttgattaatttgttcacatcttttgtttattaattgattagctttccacattatcttgattagtttccaatcatgacatcattctgtagcag 242  Q
    |||||||||||||||||||||||| || ||||  |||||||||||  ||| ||| |||||| |||||||   || ||||||||||||| ||||||||    
T  48234274 atatcttgattaatttgttcacattttctgttctttaattgattattttttcacgttatctagattagtgagcattcatgacatcattttgtagcag 48234178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 33379 - 33339
Alignment:
Q  147 tatcttgattaatttgttcacatcttttgtttattaattga 187  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  33379 tatcttgattaatttgttcacattttttgttctttaattga 33339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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