View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_29 (Length: 251)
Name: NF1466_high_29
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 53796611 - 53796376
Alignment:
| Q |
16 |
agacaataacacccgaattaccagaaaatccatccatctcagtcaaaagctgattaatagtctgttccctctcatcatttccaccaccaagaccagctcc |
115 |
Q |
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| T |
53796611 |
agacaataacgcccgaattaccagaaaatccatccatctcagtcaaaagctgattaatagtctgttccctctcatcatttccaccaccaagaccagctcc |
53796512 |
T |
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| Q |
116 |
tctctgtctcccaacagcatcaatctcatcaataaacacaatgcacggtgccttcgacttcgccttctcaaacaaatccctaactctagaagcaccaact |
215 |
Q |
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| T |
53796511 |
tctctgtctcccaacagcatcaatctcatcaataaacacaatgcacggtgccttcgacttcgccttctcaaacaaatccctaactctagaagcaccaact |
53796412 |
T |
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| Q |
216 |
cccacaaacagttccacaaactccgaagccgcacat |
251 |
Q |
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| T |
53796411 |
cccacaaacagttccacaaactccgaagccgcacat |
53796376 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 2726637 - 2726743
Alignment:
| Q |
45 |
ccatccatctcagtcaaaagctgattaatagtctgttccctctcatcatttccaccaccaagaccagctcctctctgtctcccaacagcatcaatctcat |
144 |
Q |
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|||||||| |||||||| | |||||| | || ||||| || |||||||| || ||||||| ||||| |||||||||||||| |||||||| ||||||| |
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| T |
2726637 |
ccatccatttcagtcaacaactgattcaatgtttgttctctttcatcattccctccaccaataccagtacctctctgtctccctacagcatctatctcat |
2726736 |
T |
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| Q |
145 |
caataaa |
151 |
Q |
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| T |
2726737 |
caataaa |
2726743 |
T |
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