View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_36 (Length: 240)
Name: NF1466_high_36
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 53796372 - 53796163
Alignment:
| Q |
12 |
aagaacggtgtaccagcttcaccggccactgccctcgccaacaatgtctttccagttccaggtggccccactaaaagacatcctttaggaatcttagcgc |
111 |
Q |
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| T |
53796372 |
aagaacggtgtaccagcttcaccggccactgccctcgccaacaatgtctttccagttccaggtggccccactaaaagacatcctttaggaatcttagcgc |
53796273 |
T |
|
| Q |
112 |
ctaaagcagtgtacttatcaggattcttcaagaaatcaacaacttcttgtagttccaatttcgcttgatcagcaccggccacatcagcaaaagttactcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796272 |
ctaaagcagtgtacttatcaggattcttcaagaaatcaacaacttcttgtagttccaatttcgcttgatcagcaccggccacatcagcaaaagttactcc |
53796173 |
T |
|
| Q |
212 |
agtctctggt |
221 |
Q |
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|||||||||| |
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| T |
53796172 |
agtctctggt |
53796163 |
T |
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