View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_39 (Length: 227)
Name: NF1466_high_39
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 36948223 - 36948427
Alignment:
| Q |
11 |
cttcttgtaacatctcgtgcagctccattatcattcaactatgaacaacttggtggtgacaaatcaaataccttcaatatttcaggtgatgtctctcaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36948223 |
cttcttgtaacatctcgtgcagctccattatcattcaactatgaacaacttggtggtgacaaaacaaataccttcaatatttcaggtgatgtctctcaag |
36948322 |
T |
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| Q |
111 |
acaaccaagtcctccaactcacaaattatgagaaagacagtctaggcagagtcacatattcaaaattgtttcatctttggaacataaacacaagtgaagt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36948323 |
acaaccaagtcctccaactcacaaattatgagaaagacagtctaggcagagtcacatattcaaaattgtttcatctttggaacattaacacaagtgaagt |
36948422 |
T |
|
| Q |
211 |
cacag |
215 |
Q |
| |
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||||| |
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| T |
36948423 |
cacag |
36948427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 36958357 - 36958561
Alignment:
| Q |
11 |
cttcttgtaacatctcgtgcagctccattatcattcaactatgaacaacttggtggtgacaaatcaaataccttcaatatttcaggtgatgtctctcaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36958357 |
cttcttgtaacatctcgtgcagctccattatcattcaactatgaacaacttggtggtgacaaaacaaataccttcaatatttcaggtgatgtctctcaag |
36958456 |
T |
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| Q |
111 |
acaaccaagtcctccaactcacaaattatgagaaagacagtctaggcagagtcacatattcaaaattgtttcatctttggaacataaacacaagtgaagt |
210 |
Q |
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||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
36958457 |
acaaccaagtcctccaactcacaaagtataaggaacacagtctaggcagagtcacatattcaaaattgtttcatctttgggacataaaaacaagcgaagt |
36958556 |
T |
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| Q |
211 |
cacag |
215 |
Q |
| |
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||||| |
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| T |
36958557 |
cacag |
36958561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 36937976 - 36938178
Alignment:
| Q |
11 |
cttcttgtaacatctcgtgcagctccattatcattcaactatgaacaacttggtggtgacaaatcaaataccttcaatatttcaggtgatgtctctcaag |
110 |
Q |
| |
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|||||||||||||||| ||||||||||||| | ||||||||||| | ||| || |||||||| || || | || ||| ||||||||||||||| || | |
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| T |
36937976 |
cttcttgtaacatctcatgcagctccattaactttcaactatgacaaccttagtagtgacaaaacacatgctttaaatttttcaggtgatgtctaccatg |
36938075 |
T |
|
| Q |
111 |
acaaccaagtcctccaactcacaaattatgagaaagacagtctaggcagagtcacatattcaaaattgtttcatctttggaacataaacacaagtgaagt |
210 |
Q |
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|||||||||||||||||||||| | || ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
36938076 |
acaaccaagtcctccaactcacgaggtacgagaaagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagt |
36938175 |
T |
|
| Q |
211 |
cac |
213 |
Q |
| |
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||| |
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|
| T |
36938176 |
cac |
36938178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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