View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_42 (Length: 212)
Name: NF1466_high_42
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 31829080 - 31828886
Alignment:
| Q |
19 |
caagcaataccattctccacttctataattacttccacctacatttcagattgagttggagtaaaagaatgctggaactatctcacctactccc-aatcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31829080 |
caagcaataccattctccacttctataattacttccacctacatttcagattgagttggagtaaaagaatgctggaactatctcacctactccccaatcc |
31828981 |
T |
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| Q |
118 |
acaataaaccttaagctatgcatcatacaacctgcaattttgctaacttccaaagctttcttcatatcctactcccgccactctcatagccacat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31828980 |
acaataaaccttaagctatgcatcatacaacctgcaattttgctaacttccaaagctttcttcatatcctaatcccgccactctcatagccacat |
31828886 |
T |
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