View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1466_high_5 (Length: 496)
Name: NF1466_high_5
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 228 - 482
Target Start/End: Complemental strand, 3422780 - 3422526
Alignment:
| Q |
228 |
actatatcaaattactttattttataccttcattttggtttaaagaccacatggttcgattagtgaataacatagcatatttaattattccattccaccc |
327 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3422780 |
actatatcaaattactttattttataacttcattttggtttaaagaccacatggttcgattagtgaataacatagcatatttaattattccattccaccc |
3422681 |
T |
|
| Q |
328 |
taagtacgtcccactgtgtttcgaggtagtgtctgttttgagtttaagtcctctatggttttatcttttataaacgacgtttcgttggtttgaggagtgt |
427 |
Q |
| |
|
|||||| ||||||| ||||||| ||||| | ||| | |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
3422680 |
taagtaagtcccaccgtgtttcaaggtattatctctcttgagtttaagttctctatggttttatcttttataaatgacgttttgttggtttgaggagtgt |
3422581 |
T |
|
| Q |
428 |
gtgtgttgaatataaacggtcattgacctcgactcccaaataatgtgagacttct |
482 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3422580 |
gtgcgttgaatataaacggtcattgacctcgactctcaaataatgtgagacttct |
3422526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 3422988 - 3422838
Alignment:
| Q |
20 |
aagatatagtttcacaagaaagagaaagagcagaaatgaatctaatgatgaactgtgatagattttggagagtgaagaatctacataaattttgtactgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3422988 |
aagatatagtttcacaagaaagagaaagagcagaaatgaatctaatgatgaactgtgatagattttggagagtgaagaatctacataaattttgtactgt |
3422889 |
T |
|
| Q |
120 |
gttctgtgaaagtgggtaaatggtccacaggctgtcttgaatacagtacaa |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3422888 |
gttctgtgaaagtgggtaaatggtccacaggctgtcttgaatacagtacaa |
3422838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University