View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_8 (Length: 374)
Name: NF1466_high_8
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 38477190 - 38477561
Alignment:
| Q |
4 |
atgaacgctaacaaat-aattttgatggtgcctttaaacacactgaaaaagatgctgctggtgccttacaacacactgaaaaggataaagagcacttgta |
102 |
Q |
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| T |
38477190 |
atgaacgctaagaaaacaattttgatggtgcctttaaatacactgaaaaagatgctgctggtgccttacaacacactgaaaaggataaagagcactagta |
38477289 |
T |
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| Q |
103 |
ttttccatcattcacttgtttgatgagcaacatattactgtatatttctgtcaaattttcctcattctcactcactatttaccattctccataaaaatgt |
202 |
Q |
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| T |
38477290 |
ttttccatcattcacttgtttgatgagcaacatattactgtatatatctgtcaaattttcctcattctcactcactatttaccattctccataaaaatgt |
38477389 |
T |
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| Q |
203 |
taggaccactttttcgcataaacaaacgtctgagcgattcggttcatttttggacggtacaaatttacaaaaggatggcgtcaatcgtgttcatttttct |
302 |
Q |
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| T |
38477390 |
taggaccactttttcacagaaacaaacgtctgagcgattcggttcatttttggacggtacaaatttacaaaaggatggcgtcaatcgtgttcatttttct |
38477489 |
T |
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| Q |
303 |
tccctatgggaatgatagtgtggtgctagtgtggtggttgatcagttacacagaaaatgatgtcggtttctc |
374 |
Q |
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| T |
38477490 |
tccctatgggaatcatagtgtggtgctagtgtggtggttgatcagttacacagaaaatgatgtcggtttctc |
38477561 |
T |
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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 29320959 - 29321020
Alignment:
| Q |
4 |
atgaacgctaacaaataattttgatggtgcctttaaacacactgaaaaagatgctgctggtg |
65 |
Q |
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| T |
29320959 |
atgaacgctaacaaacaattttgatggtgcctttgaacacactgaaaaagatgctgctggtg |
29321020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 9337396 - 9337339
Alignment:
| Q |
8 |
acgctaacaaataattttgatggtgcctttaaacacactgaaaaagatgctgctggtg |
65 |
Q |
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| T |
9337396 |
acgctaacaaacaattttgatggtgcctttcaacacactgaaaaagatgctgctggtg |
9337339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 40149872 - 40149929
Alignment:
| Q |
8 |
acgctaacaaataattttgatggtgcctttaaacacactgaaaaagatgctgctggtg |
65 |
Q |
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| T |
40149872 |
acgctaacaaacaattttgatggtgcctttgaacacattgaaaaagatgctgctggtg |
40149929 |
T |
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