View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_high_9 (Length: 371)
Name: NF1466_high_9
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 32868394 - 32868193
Alignment:
| Q |
54 |
aaaaatgaaaatttatatgaaaattcaaacactaacaccagggacggatgtattcatatcaatacgtgggctagacctagtgcccccattaatatattgg |
153 |
Q |
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| T |
32868394 |
aaaaaagagaatttatatgaaaattcaaacactaacaccagggacggatgtattcatatcaatacgtgggctagacctagtgcccccattaatatattgg |
32868295 |
T |
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| Q |
154 |
c-----actcaattgtaattcttgctctctaatatgttgnnnnnnnagaagaataaaatacaaagtgtcgtacttgatagtatagtaaacaatatcatga |
248 |
Q |
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| T |
32868294 |
cactaaactcaattgtaattcttgctatct-atatgttgtttttttagaagaataaaatgcaaagtgtcgtacttgatagtatagtaaacaatatcatga |
32868196 |
T |
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| Q |
249 |
atg |
251 |
Q |
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||| |
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| T |
32868195 |
atg |
32868193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 32868130 - 32868076
Alignment:
| Q |
252 |
tttattacttatgtgtttgatgatgaatgagttgatgcacggatcaataaaaatg |
306 |
Q |
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| T |
32868130 |
tttattacttatgtgtttgatgatgaatgagttgatgcacggatcaataaaaatg |
32868076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 353
Target Start/End: Complemental strand, 32868075 - 32868044
Alignment:
| Q |
322 |
atttaaaagcagattcagtctaacggtgtact |
353 |
Q |
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| T |
32868075 |
atttaaaagcagattcagtctaacggtgtact |
32868044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 50821181 - 50821258
Alignment:
| Q |
4 |
tttgatttttatgacatagatctatcaaaaaagtacatgatattgagtagaaaaatgaaaatttatatgaaaattcaaa |
82 |
Q |
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| T |
50821181 |
tttgatttttatgaaacaaatctattaaaaaa-tacatgatatttagtagataaatgagaatttctatgaaaattcaaa |
50821258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 50854680 - 50854603
Alignment:
| Q |
4 |
tttgatttttatgacatagatctatcaaaaaagtacatgatattgagtagaaaaatgaaaatttatatgaaaattcaaa |
82 |
Q |
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| T |
50854680 |
tttgatttttatgaaacaaatctattaaaaaa-tacatgatatttagtagataaatgagaatttctatgaaaattcaaa |
50854603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 50821271 - 50821312
Alignment:
| Q |
50 |
gtagaaaaatgaaaatttatatgaaaattcaaacactaacac |
91 |
Q |
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| T |
50821271 |
gtagataaatgagaatttctatgaaaattcaaacactaacac |
50821312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 50854590 - 50854549
Alignment:
| Q |
50 |
gtagaaaaatgaaaatttatatgaaaattcaaacactaacac |
91 |
Q |
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| T |
50854590 |
gtagataaatgagaatttctatgaaaattcaaacactaacac |
50854549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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