View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1466_low_1 (Length: 735)
Name: NF1466_low_1
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 725634 - 725204
Alignment:
| Q |
17 |
gtaaccacctttgcgatttgtggattactctactttgaaaaccatttcggtttgacaattgctttctacaaggaaagttgttgtgaaaggtttattaaaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
725634 |
gtaaccacctttgcgatttatggattactctactttgaaaaccatttcggtttgacaattgctttctacaaggaaagttgttgtgaaaggtttattaaaa |
725535 |
T |
|
| Q |
117 |
tgataggaggatcattttaagtataacaagcaaaataa---------------agtt--tacgtcccactttaaagttggttctagtaatactatgtaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
725534 |
tgataggaggatcattttaagtataacaagcaaaataaacctaagagtgaggtagtttctaatacccactttaaagttggttctagtaatactatgtaat |
725435 |
T |
|
| Q |
200 |
tattttatgtttccaattttttgtttgtttatgggttcggtttacgtcccatcaagatcttannnnnnnnnnnnnnnnnnnnagtaaaatttaagcttgt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | | |
|
|
| T |
725434 |
tattttatgtttccaattttttgtttgtttatgggttcggtttatgtcccatcaagatcttatttttttcttccttttttttagtaaaatttaag--tat |
725337 |
T |
|
| Q |
300 |
ttattcataaatataacatgtcaaaaataacctagttcttaagtaaaatttgagtttaaaagcatgacacgacaacaatgaaattgcatatattttggca |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||| |||||| |
|
|
| T |
725336 |
ttattcataaatataacatgtcaaaaataacctagttcttaagtaaaatttgagtttaaaagcatcatacgacaacaatgaaatttcaactatgttggca |
725237 |
T |
|
| Q |
400 |
ctataaaacaacaaactattgtttgcatcatcc |
432 |
Q |
| |
|
| ||||||||||| |||||||||||||||||| |
|
|
| T |
725236 |
cattaaaacaacaacctattgtttgcatcatcc |
725204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 627 - 726
Target Start/End: Complemental strand, 724672 - 724571
Alignment:
| Q |
627 |
aaatcaaataccccat--cctatgaaatgtatagttacatgcttccatatttatgaaatgcatgtcaaccaaatcatctcaaagcattcattcactttct |
724 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
724672 |
aaatcaaataccccatatcttatgaaatgtatagttacatgcttccatatttctgaaatgcatgtcaaccaaatcatgtgaaagcattcattcactttct |
724573 |
T |
|
| Q |
725 |
tc |
726 |
Q |
| |
|
|| |
|
|
| T |
724572 |
tc |
724571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University