View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_10 (Length: 364)
Name: NF1466_low_10
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 14737094 - 14737434
Alignment:
| Q |
6 |
agagagaagaaaactatatcctacaccaacattcaacttcatattgtattttggaaaaaggaatgctcattatgctgtaacaaggacatgatgattttgt |
105 |
Q |
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| T |
14737094 |
agagaaaagaaaactatatcctacaccaacattcaacttcatattgtattttggaaaaaggaatgctcattatgttgtcacaaggacatgatgattttgt |
14737193 |
T |
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| Q |
106 |
aacatg---ctaaaatttctatttctaataaggtttcatcttaatttgcgattatgtataaatgataatttaacagaannnnnnngcacgagagaactat |
202 |
Q |
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| T |
14737194 |
aacattaatctaaaatttctatttctaataaggtttcatcttaatttgcgattatgtataaatgataatttaacagaaattttttgcacgagagaactat |
14737293 |
T |
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| Q |
203 |
aagggttat---tcttgaatataaatacatactccttccgatttgggaaaacacaaaatcatgaaggcaagagatcgcattgaatgaagaacatccatct |
299 |
Q |
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| T |
14737294 |
aagggttattattcttgaatataaatacatactccttccgatttgggaaaacacacaatcatgtagtcaagagatcgcattgaatgaagaacatacatcc |
14737393 |
T |
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| Q |
300 |
aaatttaattataaatacgatttgtaagcaatattgaagtc |
340 |
Q |
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| T |
14737394 |
aaatttaattataaatacgagttgtaagcaatattgaagtc |
14737434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 333
Target Start/End: Original strand, 14743677 - 14743993
Alignment:
| Q |
22 |
tatcctacaccaacattcaacttcatattgtattttggaaaaaggaatgct-----------cattatgctgtaacaaggacatgatgattttgtaacat |
110 |
Q |
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| T |
14743677 |
tatcctacaccaacattcaacttcatattgtattttggaaaaaggaatgcttacatcttaagcattatgttgttacaaggacatgataattttgtaacat |
14743776 |
T |
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| Q |
111 |
gctaaaatttctatttctaataaggtttcatcttaatttgcgattatgtataaatgataatttaacagaannnnnnngcacgagagaactataagggtta |
210 |
Q |
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| T |
14743777 |
tccaaaatttctagt------aaggtttcatcttaatttgccattatgtataaatgataaattaacagaaaatttttgcacgagaaaag-----ggttta |
14743865 |
T |
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| Q |
211 |
ttcttgaatataaa----tacatactccttccgatttgggaaaacacaaaatcatgaaggcaagagatcgcattgaatgaagaacatccatctaaattta |
306 |
Q |
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| T |
14743866 |
ttcttaaatataaacccatacacactccttttaattcgaaaaaacacacaatcacgcagtcaagagatcgcattggatgaagatcatacaaccaaaatta |
14743965 |
T |
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| Q |
307 |
attat-aaatacgatttgtaagcaatat |
333 |
Q |
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| T |
14743966 |
attttaaaatacgagttgtaagcaatat |
14743993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 13637360 - 13637401
Alignment:
| Q |
27 |
tacaccaacattcaacttcatattgtattttggaaaaaggaa |
68 |
Q |
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| T |
13637360 |
tacaccaacattcaaattcatattgtaatttggaaaaaggaa |
13637401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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