View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_low_13 (Length: 342)

Name: NF1466_low_13
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_low_13
NF1466_low_13
[»] chr6 (3 HSPs)
chr6 (4-96)||(10095557-10095649)
chr6 (7-94)||(10078880-10078967)
chr6 (140-187)||(10095494-10095541)


Alignment Details
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 10095649 - 10095557
Alignment:
Q  4 cgtttttatatgggttaaagaaaagagtgtgcaataagttggtattttactataataattatattatttctatatctttcttgtaaaatgagc 96  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |||| ||||||||||||    
T  10095649 cgtttttatatggattaaagaaaagagtgtgcaataagtttgtattttactattagaattatattatttctatatatttcctgtaaaatgagc 10095557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 10078967 - 10078880
Alignment:
Q  7 ttttatatgggttaaagaaaagagtgtgcaataagttggtattttactataataattatattatttctatatctttcttgtaaaatga 94  Q
    ||||||||||| |||||||||||||||||| ||||||  ||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  10078967 ttttatatgggctaaagaaaagagtgtgcattaagtttttattttactattagaattatattatttctatatctttcctgtaaaatga 10078880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 10095541 - 10095494
Alignment:
Q  140 gataacaactgcaatatgaaatttgtgcattatttctatgtttgatgt 187  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  10095541 gataacaacagcaatatggcatttgtgcattatttctatgtttgatgt 10095494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University