View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_15 (Length: 337)
Name: NF1466_low_15
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 50 - 321
Target Start/End: Original strand, 40473066 - 40473337
Alignment:
| Q |
50 |
aattgatgtacaaacaccacatattctttaactatgttcataaatctggcagatggtgttctttgaagttggaaggcataaaattatgttcctgaaactc |
149 |
Q |
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| T |
40473066 |
aattgatgtacaaacaccacatattcttttactatgttcataaatctggcagatggtgttcttcgaagttggaaggcataaaattatgttcctgaaactc |
40473165 |
T |
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| Q |
150 |
tcaagtcttaacaacagaattcaaatcaagagactgtaactgaactattttttgttccaggctcaagcctttatcttggaacttttatcctttaaatata |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40473166 |
tcaagtcttaacaacagaattcaaatcaagagactgtaacttaactattttttggtccaggctcaagccttcatcttggaacttttatcctttaaatata |
40473265 |
T |
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| Q |
250 |
taaccttgatggtcagcattttcaaataaaaagatagagaaaatttgaattacaaatcttaattatttactt |
321 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40473266 |
taatcttgatggtcagcattttcaaataaaaagatatagaaaatttgaattacaaatcttaattatttactt |
40473337 |
T |
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