View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_low_18 (Length: 313)

Name: NF1466_low_18
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_low_18
NF1466_low_18
[»] chr7 (8 HSPs)
chr7 (10-271)||(33885719-33885980)
chr7 (152-238)||(33894505-33894591)
chr7 (189-238)||(5276143-5276192)
chr7 (191-236)||(45078214-45078259)
chr7 (203-238)||(25670687-25670722)
chr7 (189-238)||(29574703-29574752)
chr7 (194-238)||(5373149-5373193)
chr7 (152-238)||(30133932-30134017)
[»] chr2 (6 HSPs)
chr2 (192-238)||(18962140-18962186)
chr2 (203-235)||(3235487-3235519)
chr2 (285-313)||(3611157-3611185)
chr2 (285-313)||(10143103-10143131)
chr2 (152-235)||(10190161-10190244)
chr2 (189-237)||(29430675-29430723)
[»] chr6 (7 HSPs)
chr6 (187-238)||(4247736-4247787)
chr6 (151-238)||(33416266-33416353)
chr6 (203-238)||(33259749-33259784)
chr6 (194-236)||(29249398-29249440)
chr6 (194-238)||(2514626-2514670)
chr6 (195-231)||(2732338-2732374)
chr6 (285-313)||(32843426-32843454)
[»] chr4 (7 HSPs)
chr4 (189-238)||(4191658-4191707)
chr4 (192-235)||(21157690-21157733)
chr4 (154-234)||(43932316-43932397)
chr4 (193-238)||(51555969-51556014)
chr4 (192-236)||(2980575-2980619)
chr4 (285-313)||(4663807-4663835)
chr4 (194-234)||(15511441-15511481)
[»] chr3 (5 HSPs)
chr3 (203-238)||(52413223-52413258)
chr3 (193-234)||(16790462-16790503)
chr3 (285-313)||(24158613-24158641)
chr3 (189-237)||(24268258-24268306)
chr3 (194-238)||(41028953-41028997)
[»] chr5 (6 HSPs)
chr5 (196-238)||(7096229-7096271)
chr5 (153-238)||(26516180-26516266)
chr5 (194-238)||(10391277-10391321)
chr5 (194-238)||(13224353-13224397)
chr5 (203-235)||(31030233-31030265)
chr5 (249-313)||(40499786-40499848)
[»] chr1 (4 HSPs)
chr1 (195-237)||(24146362-24146404)
chr1 (192-238)||(38651511-38651557)
chr1 (189-238)||(870964-871013)
chr1 (285-313)||(37818395-37818423)
[»] chr8 (2 HSPs)
chr8 (284-313)||(1561209-1561238)
chr8 (195-235)||(5290566-5290606)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 33885980 - 33885719
Alignment:
Q  10 aagaatataacattctcataagggtctcccttgcagttttcaccagtggctgtaaaatagaaattgtccacaatattcaaaatcagctacacttaagaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33885980 aagaatataacattctcataagggtctcccttgcagttttcaccagtggctgtaaaatagaaattgtccacaatattcaaaatcagctacacttaagaat 33885881  T
Q  110 gcattaaagagtcacacaaaaaagaaaagaatcaaacaaggttgtttggataaacagctcaattaacgcttatgatatgagcgtttatcatgcaagtgct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33885880 gcattaaagagtcacacaaaaaagaaaagaatcaaacaaggttgtttggataaacagctcaattaacgcttatgatatgaccgtttatcatgcaagtgct 33885781  T
Q  210 tatgtatcagctatttttataacaaaagacataggctatgtttggataaacaactcaattaa 271  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  33885780 tatgtatcagcaatttttataataaaagacataggccatgtttggataaacaactcaattaa 33885719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 33894505 - 33894591
Alignment:
Q  152 tgtttggataaacagctcaattaacgcttatgatatgagcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    ||||||||||||||  | ||| |  |||||||| ||||  ||| |||||| |||||||||||||| |||||||| ||||||||||||    
T  33894505 tgtttggataaacaatttaataagtgcttatgacatgaatgttcatcatgtaagtgcttatgtataagctatttctataacaaaaga 33894591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 5276143 - 5276192
Alignment:
Q  189 agcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||||| |  |||||||||||||| |||||||||||||||||||||    
T  5276143 agcgtttatcgtttaagtgcttatgtataagctatttttataacaaaaga 5276192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 45078214 - 45078259
Alignment:
Q  191 cgtttatcatgcaagtgcttatgtatcagctatttttataacaaaa 236  Q
    ||||||||||  |||||||||||||| |||||||||||||||||||    
T  45078214 cgtttatcatataagtgcttatgtataagctatttttataacaaaa 45078259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 25670722 - 25670687
Alignment:
Q  203 aagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||||||||| |||||||||||||||||||||    
T  25670722 aagtgcttatgtataagctatttttataacaaaaga 25670687  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 29574752 - 29574703
Alignment:
Q  189 agcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    ||||||||||||  || ||||||||||| |||||||||||| ||||||||    
T  29574752 agcgtttatcatataaatgcttatgtataagctatttttatgacaaaaga 29574703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 5373149 - 5373193
Alignment:
Q  194 ttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||| ||||||||||||||  ||||||| ||||||||||||    
T  5373149 ttatcatgtaagtgcttatgtatatgctatttctataacaaaaga 5373193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 30133932 - 30134017
Alignment:
Q  152 tgtttggataaacagctcaattaac-gcttatgatatgagcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||||||||| |||||||||  ||||||   || |||| |||||||  ||||| |||||||| ||||||||||| |||||||||    
T  30133932 tgtttggataaacaactcaattaaatgcttatagcataagcgcttatcat--aagtgtttatgtataagctatttttacaacaaaaga 30134017  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 18962186 - 18962140
Alignment:
Q  192 gtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||    
T  18962186 gtttatcatgtaagtgcttatgtattagctatttttataacaaaaga 18962140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 3235519 - 3235487
Alignment:
Q  203 aagtgcttatgtatcagctatttttataacaaa 235  Q
    |||||||||||||| ||||||||||||||||||    
T  3235519 aagtgcttatgtattagctatttttataacaaa 3235487  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 3611157 - 3611185
Alignment:
Q  285 ataagtgcttatgtataagttatttctat 313  Q
    |||||||||||||||||||||||||||||    
T  3611157 ataagtgcttatgtataagttatttctat 3611185  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 10143103 - 10143131
Alignment:
Q  285 ataagtgcttatgtataagttatttctat 313  Q
    |||||||||||||||||||||||||||||    
T  10143103 ataagtgcttatgtataagttatttctat 10143131  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 10190161 - 10190244
Alignment:
Q  152 tgtttggataaacagctcaattaa-cgcttatgatatgagcgtttatcatgcaagtgcttatgtatcagctatttttataacaaa 235  Q
    |||||||||||| ||||||||||| | |||||  || ||| | |||||||  |||||||||||||| | ||||||||||||||||    
T  10190161 tgtttggataaa-agctcaattaagcacttatagtaggagtggttatcatataagtgcttatgtataaactatttttataacaaa 10190244  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 29430675 - 29430723
Alignment:
Q  189 agcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaag 237  Q
    |||||||||||| |||| | |||||||| |||||||| |||||||||||    
T  29430675 agcgtttatcatacaagggtttatgtataagctatttctataacaaaag 29430723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 4247787 - 4247736
Alignment:
Q  187 tgagcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||| |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  4247787 tgagtgtttatcatgtaagtgcttatgtataagctatttctataacaaaaga 4247736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 33416266 - 33416353
Alignment:
Q  151 ttgtttggataaacagctcaattaacgcttatgatatgagcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    ||||||||||||||| |  |||||| |||||| | || |||| | || ||  |||||||||||||| |||||||||||||||||||||    
T  33416266 ttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttataacaaaaga 33416353  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 33259749 - 33259784
Alignment:
Q  203 aagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||||||||| |||||||||||||||||||||    
T  33259749 aagtgcttatgtataagctatttttataacaaaaga 33259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 29249398 - 29249440
Alignment:
Q  194 ttatcatgcaagtgcttatgtatcagctatttttataacaaaa 236  Q
    |||||||  ||||||||||||||||||||||| ||||||||||    
T  29249398 ttatcatataagtgcttatgtatcagctatttctataacaaaa 29249440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 2514626 - 2514670
Alignment:
Q  194 ttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||| |||||||||||||| |||||||| ||||| ||||||    
T  2514626 ttatcatgtaagtgcttatgtataagctatttctataataaaaga 2514670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 2732374 - 2732338
Alignment:
Q  195 tatcatgcaagtgcttatgtatcagctatttttataa 231  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  2732374 tatcatgcaagtgtttatgtataagctatttttataa 2732338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 32843454 - 32843426
Alignment:
Q  285 ataagtgcttatgtataagttatttctat 313  Q
    |||||||||||||||||||||||||||||    
T  32843454 ataagtgcttatgtataagttatttctat 32843426  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 4191658 - 4191707
Alignment:
Q  189 agcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||||||||    
T  4191658 agcgtttatcatataagtgcttatgtataagctatttctataacaaaaga 4191707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 21157690 - 21157733
Alignment:
Q  192 gtttatcatgcaagtgcttatgtatcagctatttttataacaaa 235  Q
    |||||||||  |||||||||||||||||||||||| ||||||||    
T  21157690 gtttatcatataagtgcttatgtatcagctattttgataacaaa 21157733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 43932316 - 43932397
Alignment:
Q  154 tttggataaacagctcaattaa-cgcttatgatatgagcgtttatcatgcaagtgcttatgtatcagctatttttataacaa 234  Q
    ||||||||||||| | |||||| | ||||| | || || ||||||||| ||||||||||||||| | ||||||||| |||||    
T  43932316 tttggataaacagattaattaagcacttataacataagtgtttatcatacaagtgcttatgtataaactatttttacaacaa 43932397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 51556014 - 51555969
Alignment:
Q  193 tttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    ||||||||  |||||||||||||| ||||||| |||||||||||||    
T  51556014 tttatcatataagtgcttatgtataagctattattataacaaaaga 51555969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 2980619 - 2980575
Alignment:
Q  192 gtttatcatgcaagtgcttatgtatcagctatttttataacaaaa 236  Q
    |||||||||  |||||||||||||| |||||||| ||||||||||    
T  2980619 gtttatcatataagtgcttatgtataagctatttctataacaaaa 2980575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 4663835 - 4663807
Alignment:
Q  285 ataagtgcttatgtataagttatttctat 313  Q
    |||||||||||||||||||||||||||||    
T  4663835 ataagtgcttatgtataagttatttctat 4663807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 15511481 - 15511441
Alignment:
Q  194 ttatcatgcaagtgcttatgtatcagctatttttataacaa 234  Q
    |||||||| |||||||||||||| || ||||||||||||||    
T  15511481 ttatcatgtaagtgcttatgtataagttatttttataacaa 15511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 52413258 - 52413223
Alignment:
Q  203 aagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||||||||| |||||||||||||||||||||    
T  52413258 aagtgcttatgtataagctatttttataacaaaaga 52413223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 16790503 - 16790462
Alignment:
Q  193 tttatcatgcaagtgcttatgtatcagctatttttataacaa 234  Q
    ||||||||  |||||||||||||| |||||||||||||||||    
T  16790503 tttatcatataagtgcttatgtataagctatttttataacaa 16790462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 24158641 - 24158613
Alignment:
Q  285 ataagtgcttatgtataagttatttctat 313  Q
    |||||||||||||||||||||||||||||    
T  24158641 ataagtgcttatgtataagttatttctat 24158613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 24268306 - 24268258
Alignment:
Q  189 agcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaag 237  Q
    |||||||||||| ||||||||||||||| | |||||| |||| ||||||    
T  24268306 agcgtttatcatacaagtgcttatgtataaactatttctatagcaaaag 24268258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 41028997 - 41028953
Alignment:
Q  194 ttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||  |||||||||||||| |||||||| ||||||||||||    
T  41028997 ttatcatataagtgcttatgtataagctatttctataacaaaaga 41028953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 7096271 - 7096229
Alignment:
Q  196 atcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||    
T  7096271 atcatacaagtgcttatgtataagctatttctataacaaaaga 7096229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 26516180 - 26516266
Alignment:
Q  153 gtttggataaacagctcaattaa-cgcttatgatatgagcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    ||||||||||||| || |||||| |||||||   || |||| |||||||  |||||||||||||| |||||||| || |||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaaga 26516266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 10391277 - 10391321
Alignment:
Q  194 ttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||  ||||||||| |||| |||||||||||||||||||||    
T  10391277 ttatcatataagtgcttacgtataagctatttttataacaaaaga 10391321  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 13224353 - 13224397
Alignment:
Q  194 ttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||  |||||||||||||| |||||||| ||||||||||||    
T  13224353 ttatcatagaagtgcttatgtataagctatttctataacaaaaga 13224397  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 31030265 - 31030233
Alignment:
Q  203 aagtgcttatgtatcagctatttttataacaaa 235  Q
    |||||||||||||| ||||||||||||||||||    
T  31030265 aagtgcttatgtataagctatttttataacaaa 31030233  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 40499848 - 40499786
Alignment:
Q  249 gtttggataaacaactcaattaaaaaacttatatacataagtgcttatgtataagttatttctat 313  Q
    |||||||||||||||| ||||||||  |||||  | ||||||||||||||| |||||||||||||    
T  40499848 gtttggataaacaacttaattaaaag-cttatc-atataagtgcttatgtacaagttatttctat 40499786  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 24146404 - 24146362
Alignment:
Q  195 tatcatgcaagtgcttatgtatcagctatttttataacaaaag 237  Q
    |||||||||||||||||||||| || ||||| |||||||||||    
T  24146404 tatcatgcaagtgcttatgtataagttatttctataacaaaag 24146362  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 38651557 - 38651511
Alignment:
Q  192 gtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||||||||| |||||||||||||| ||||| || ||||||||||||    
T  38651557 gtttatcatgtaagtgcttatgtataagctaattctataacaaaaga 38651511  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 870964 - 871013
Alignment:
Q  189 agcgtttatcatgcaagtgcttatgtatcagctatttttataacaaaaga 238  Q
    |||| |||||||  |||||||||||||| | |||||||||||||||||||    
T  870964 agcgcttatcatataagtgcttatgtataaactatttttataacaaaaga 871013  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 37818395 - 37818423
Alignment:
Q  285 ataagtgcttatgtataagttatttctat 313  Q
    |||||||||||||||||||||||||||||    
T  37818395 ataagtgcttatgtataagttatttctat 37818423  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 1561209 - 1561238
Alignment:
Q  284 cataagtgcttatgtataagttatttctat 313  Q
    ||||||||||||||||||||||||||||||    
T  1561209 cataagtgcttatgtataagttatttctat 1561238  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 5290566 - 5290606
Alignment:
Q  195 tatcatgcaagtgcttatgtatcagctatttttataacaaa 235  Q
    |||||| ||||||||||||||| |||||||| |||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaaa 5290606  T

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