View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_19 (Length: 312)
Name: NF1466_low_19
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 44684166 - 44684436
Alignment:
| Q |
14 |
atatatccttcctctacaaagaatacacattttgcctatttgtacactctatctccgaaattgatattataccactcccatgcttattattcaacactca |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44684166 |
atatatccttcctctacaaagaatacacgttttgcctatttgtacactctatcttcgaaattgatattataccactcccatgcttattattcaacactca |
44684265 |
T |
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| Q |
114 |
tttgcattaagacttttcttcttttcttctgctagcagccaccacgtccactttgataataaagacatatcatataaccttgtattttttacatccaaat |
213 |
Q |
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|||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44684266 |
tttgcattaagacttttcgtcta--------ctagcaaccaccacgtccactttgataataaagacatatcatataaccttgtattttttacatccaaat |
44684357 |
T |
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| Q |
214 |
gtgaatgattccctaaactccactcacaatctgtaatatataattgatcgcacatgacgatatgaatagcgtatggtgc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44684358 |
gtgaatgattccctaaactccactcacaatctgtaatatataattgatcgcacatgacgatatgaatagcgtatggtgc |
44684436 |
T |
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