View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_low_2 (Length: 591)

Name: NF1466_low_2
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_low_2
NF1466_low_2
[»] chr3 (31 HSPs)
chr3 (15-572)||(3610413-3610984)
chr3 (302-391)||(16000016-16000105)
chr3 (345-391)||(14829660-14829706)
chr3 (301-391)||(28917971-28918061)
chr3 (295-391)||(41961643-41961739)
chr3 (345-391)||(10335329-10335375)
chr3 (292-391)||(15796284-15796383)
chr3 (345-409)||(14223896-14223960)
chr3 (345-388)||(26492248-26492291)
chr3 (308-388)||(26508083-26508163)
chr3 (345-391)||(24205084-24205130)
chr3 (345-391)||(25064879-25064925)
chr3 (345-381)||(3865599-3865635)
chr3 (293-374)||(4987282-4987363)
chr3 (345-389)||(5441074-5441118)
chr3 (302-391)||(8587021-8587110)
chr3 (345-381)||(10318077-10318113)
chr3 (345-381)||(33359741-33359777)
chr3 (302-391)||(55401045-55401134)
chr3 (258-386)||(11610496-11610623)
chr3 (345-391)||(3164068-3164114)
chr3 (345-387)||(8383231-8383273)
chr3 (345-375)||(14747547-14747577)
chr3 (345-375)||(21479104-21479134)
chr3 (345-391)||(35994780-35994826)
chr3 (345-375)||(40052318-40052348)
chr3 (345-386)||(14216867-14216908)
chr3 (345-386)||(14222996-14223037)
chr3 (347-384)||(17276698-17276735)
chr3 (351-391)||(23915929-23915969)
chr3 (258-290)||(41961584-41961616)
[»] chr5 (25 HSPs)
chr5 (292-391)||(21522720-21522819)
chr5 (292-391)||(21533286-21533385)
chr5 (292-391)||(21542000-21542099)
chr5 (293-388)||(41633708-41633803)
chr5 (302-391)||(21191056-21191145)
chr5 (345-391)||(22013384-22013430)
chr5 (345-391)||(15382447-15382493)
chr5 (345-391)||(36642805-36642851)
chr5 (266-391)||(13287366-13287488)
chr5 (302-391)||(6247592-6247681)
chr5 (345-392)||(19552586-19552633)
chr5 (345-391)||(19820437-19820483)
chr5 (308-391)||(24906307-24906390)
chr5 (296-375)||(31084309-31084388)
chr5 (345-386)||(15410491-15410532)
chr5 (346-383)||(41995449-41995486)
chr5 (309-390)||(6326304-6326385)
chr5 (345-381)||(14674249-14674285)
chr5 (345-381)||(27144443-27144479)
chr5 (345-388)||(30135286-30135329)
chr5 (345-391)||(19579671-19579717)
chr5 (258-292)||(43564961-43564995)
chr5 (345-381)||(6035463-6035499)
chr5 (302-375)||(8420013-8420086)
chr5 (358-390)||(21711308-21711340)
[»] chr6 (24 HSPs)
chr6 (292-391)||(16766667-16766766)
chr6 (292-391)||(9107360-9107459)
chr6 (296-388)||(12696297-12696389)
chr6 (302-391)||(34595104-34595193)
chr6 (295-391)||(8365512-8365608)
chr6 (345-388)||(16833281-16833324)
chr6 (345-391)||(7938086-7938132)
chr6 (345-390)||(426557-426602)
chr6 (345-385)||(3398595-3398635)
chr6 (302-387)||(7977830-7977915)
chr6 (345-389)||(9027150-9027194)
chr6 (345-388)||(8777016-8777059)
chr6 (345-391)||(3209352-3209397)
chr6 (258-335)||(9025450-9025527)
chr6 (345-386)||(9658854-9658895)
chr6 (345-381)||(17841632-17841668)
chr6 (345-391)||(853902-853948)
chr6 (345-391)||(1681728-1681774)
chr6 (345-391)||(6389713-6389759)
chr6 (258-292)||(7378059-7378093)
chr6 (346-388)||(18803555-18803597)
chr6 (347-388)||(21068199-21068240)
chr6 (302-381)||(28152079-28152157)
chr6 (345-385)||(13851712-13851752)
[»] chr7 (21 HSPs)
chr7 (296-388)||(13770664-13770756)
chr7 (292-391)||(24339612-24339711)
chr7 (301-391)||(27945011-27945101)
chr7 (260-381)||(18215144-18215265)
chr7 (345-388)||(24105651-24105694)
chr7 (345-387)||(5235960-5236002)
chr7 (345-391)||(13557787-13557833)
chr7 (345-390)||(11722141-11722186)
chr7 (345-409)||(21864757-21864822)
chr7 (345-382)||(22484004-22484041)
chr7 (348-388)||(4793836-4793876)
chr7 (345-380)||(7197340-7197375)
chr7 (345-388)||(11061119-11061162)
chr7 (292-335)||(21560529-21560572)
chr7 (258-292)||(598288-598322)
chr7 (345-387)||(26329425-26329467)
chr7 (345-391)||(26733274-26733320)
chr7 (345-387)||(43027512-43027554)
chr7 (345-391)||(43249963-43250009)
chr7 (258-291)||(29812603-29812636)
chr7 (345-381)||(25791633-25791669)
[»] chr8 (19 HSPs)
chr8 (292-391)||(22651946-22652045)
chr8 (258-361)||(25566841-25566944)
chr8 (345-391)||(29510347-29510393)
chr8 (345-388)||(4673468-4673511)
chr8 (345-391)||(22197785-22197831)
chr8 (258-391)||(13436915-13437053)
chr8 (289-391)||(24362189-24362291)
chr8 (302-388)||(24669406-24669492)
chr8 (345-409)||(25192390-25192455)
chr8 (314-374)||(22595981-22596041)
chr8 (302-412)||(20873024-20873128)
chr8 (345-388)||(4298929-4298972)
chr8 (345-391)||(926831-926877)
chr8 (258-292)||(15816063-15816097)
chr8 (345-391)||(24857979-24858025)
chr8 (345-390)||(27213518-27213563)
chr8 (258-291)||(39820509-39820542)
chr8 (345-386)||(41838166-41838207)
chr8 (345-381)||(36450797-36450833)
[»] scaffold0223 (1 HSPs)
scaffold0223 (276-391)||(20142-20253)
[»] chr4 (21 HSPs)
chr4 (302-391)||(21945473-21945562)
chr4 (302-391)||(23292986-23293075)
chr4 (295-391)||(19482638-19482734)
chr4 (345-391)||(28084491-28084537)
chr4 (350-391)||(5414220-5414261)
chr4 (258-377)||(11596302-11596427)
chr4 (258-381)||(30298926-30299043)
chr4 (258-381)||(30327794-30327911)
chr4 (345-389)||(847923-847967)
chr4 (345-409)||(28720828-28720892)
chr4 (345-388)||(3947809-3947852)
chr4 (345-388)||(40481610-40481653)
chr4 (345-388)||(49430998-49431041)
chr4 (345-387)||(14126154-14126196)
chr4 (345-391)||(35158028-35158074)
chr4 (345-386)||(11651177-11651218)
chr4 (345-386)||(12708121-12708162)
chr4 (258-302)||(18844428-18844470)
chr4 (345-409)||(752977-753041)
chr4 (260-292)||(8423665-8423697)
chr4 (345-377)||(24543965-24543997)
[»] scaffold0053 (1 HSPs)
scaffold0053 (345-391)||(8768-8814)
[»] scaffold0003 (2 HSPs)
scaffold0003 (345-391)||(241564-241610)
scaffold0003 (258-292)||(241685-241719)
[»] chr2 (21 HSPs)
chr2 (345-391)||(21624236-21624282)
chr2 (345-409)||(21782861-21782926)
chr2 (301-388)||(36756343-36756430)
chr2 (301-391)||(15657834-15657924)
chr2 (345-383)||(6940233-6940271)
chr2 (345-391)||(19536441-19536487)
chr2 (345-387)||(20539717-20539759)
chr2 (302-381)||(37558957-37559036)
chr2 (302-382)||(20473301-20473381)
chr2 (309-381)||(21374706-21374778)
chr2 (257-292)||(23058388-23058423)
chr2 (345-380)||(24894370-24894405)
chr2 (258-292)||(11223798-11223832)
chr2 (345-391)||(18276491-18276537)
chr2 (345-375)||(27460012-27460042)
chr2 (350-388)||(28596445-28596483)
chr2 (345-375)||(38117202-38117232)
chr2 (345-386)||(14996267-14996308)
chr2 (345-386)||(21616737-21616778)
chr2 (345-409)||(23717978-23718042)
chr2 (345-409)||(24105650-24105714)
[»] chr1 (27 HSPs)
chr1 (302-388)||(19058856-19058943)
chr1 (292-386)||(47989473-47989566)
chr1 (292-389)||(5376490-5376587)
chr1 (345-388)||(5944254-5944297)
chr1 (345-388)||(14359564-14359607)
chr1 (308-388)||(48450593-48450673)
chr1 (345-391)||(398808-398854)
chr1 (292-391)||(6612161-6612260)
chr1 (345-391)||(40917721-40917767)
chr1 (345-391)||(48040505-48040551)
chr1 (258-297)||(398738-398777)
chr1 (345-390)||(1262855-1262900)
chr1 (296-390)||(1486703-1486797)
chr1 (350-391)||(10577783-10577824)
chr1 (345-381)||(18556499-18556535)
chr1 (345-381)||(46348426-46348462)
chr1 (345-388)||(2896164-2896207)
chr1 (302-386)||(41877470-41877554)
chr1 (345-391)||(5927383-5927429)
chr1 (345-391)||(13011259-13011305)
chr1 (258-292)||(16812636-16812670)
chr1 (347-388)||(5898311-5898352)
chr1 (345-385)||(16927228-16927268)
chr1 (258-290)||(18556390-18556422)
chr1 (256-292)||(26830667-26830703)
chr1 (345-381)||(29144401-29144437)
chr1 (345-381)||(36878441-36878477)
[»] scaffold0018 (1 HSPs)
scaffold0018 (345-391)||(178862-178908)
[»] scaffold0007 (1 HSPs)
scaffold0007 (345-391)||(225311-225357)
[»] scaffold0027 (1 HSPs)
scaffold0027 (302-388)||(46655-46741)
[»] scaffold0171 (2 HSPs)
scaffold0171 (348-388)||(23393-23433)
scaffold0171 (348-388)||(23483-23523)
[»] scaffold0103 (1 HSPs)
scaffold0103 (314-381)||(51791-51858)
[»] scaffold0246 (1 HSPs)
scaffold0246 (345-388)||(19549-19592)
[»] scaffold0306 (1 HSPs)
scaffold0306 (345-391)||(13370-13416)
[»] scaffold0152 (1 HSPs)
scaffold0152 (345-391)||(21911-21957)
[»] scaffold0066 (1 HSPs)
scaffold0066 (314-369)||(33375-33430)
[»] scaffold0019 (1 HSPs)
scaffold0019 (345-375)||(71709-71739)
[»] scaffold0116 (1 HSPs)
scaffold0116 (350-391)||(9868-9909)
[»] scaffold0793 (1 HSPs)
scaffold0793 (345-409)||(4927-4991)
[»] scaffold0068 (1 HSPs)
scaffold0068 (358-390)||(2570-2602)


Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 15 - 572
Target Start/End: Complemental strand, 3610984 - 3610413
Alignment:
Q  15 aaacaatgcaaatgtggtatataattttaaaatttaaagtaaacacattttcttatacacagatacttgaggttttgatttatttacatgaagatattat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3610984 aaacaatgcaaatgtggtatataattttaaaatttaaagtaaacacattttcttatatacagatacttgaggttttgatttatttacatgaagatattat 3610885  T
Q  115 acaaacctacttagaactaataaagttaaaacaatttgtagttcagtgaatcggtgatatgagttgagacgctgaataagtattaagaaggaggttgaga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3610884 acaaacctacttagaactaataaagttaaaacaatttgtagttcagtcaatcgatgatatgagttgagacgctgaataagtattaagaaggaggttgaga 3610785  T
Q  215 gttcgatttctcctcctaacaaaattaactaactgctaatattaagcacggacacttctcagattaggcgtgtcc----cggacaccgatac-gacaacg 309  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    | ||||||||||| |||||||    
T  3610784 gttcgatttctcctcctaacaaaattaactaactactaatattaagcacagacactactcagattaggcgtgtccgtgtccgacaccgatacggacaacg 3610685  T
Q  310 acagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggt-------ggtgtattcgtg 402  Q
    ||| | ||||||||||||||||||||||       ||||||||| |||||| |||||||||||||||||||||||||||||       | ||||||||||    
T  3610684 acactggtaattacactgagttatgttatttttttaaattattaactgtgttggcgtgtcagtgtctgtgtcgtgtccggtgttcgtggatgtattcgtg 3610585  T
Q  403 cttcataatatatgtttataagaaaaaattgaaacaatgtataataccttttttcttcatcatagcctccaatgttcttgtaatttgggaatgcaacttg 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3610584 cttcataatatatgtttataagaaaaaattgaaacaatgtataataccttttttcctcatcatagcctccaatgttcttgtaatttgggaatgcaacttg 3610485  T
Q  503 acctgattcaatgtgcctaacatcccttaggagatgttc--agtgtctcttaacatcctcaggagtcttccc 572  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||    
T  3610484 acctgattcaatgtgcctaacatcccttaggaggtgttcatagtgtctcttaacatcctcaggagtcttccc 3610413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 16000016 - 16000105
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||| ||||||||| ||||||||       |||||||||| |||||||||||||||||||||||||||||| |||||    
T  16000016 cgacaccgacacttgtagttacactgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtg 16000105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 14829706 - 14829660
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  14829706 aaattattagctgtgtcggcgtgtcagtgtctgtgtcatgtccggtg 14829660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 391
Target Start/End: Complemental strand, 28918061 - 28917971
Alignment:
Q  301 acgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||| ||||| ||||||||||||||| |||||| |       |||||||||||| ||||||||||||||| || |||||||||||||||    
T  28918061 acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtg 28917971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 391
Target Start/End: Original strand, 41961643 - 41961739
Alignment:
Q  295 accgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| |||||| ||||| |||||||||||| || | |||| |       |||||||||| |||| |||||||||||||||||||||||||||||||    
T  41961643 accgacacgacaccgacacttgtaattacaccgaataatgtgatattttcaaattattagttgtgacggcgtgtcagtgtctgtgtcgtgtccggtg 41961739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 10335329 - 10335375
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||    
T  10335329 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 10335375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 292 - 391
Target Start/End: Original strand, 15796284 - 15796383
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||| | |||||| ||||| ||||||||||||||| |||| | |       ||||||||| |||||||||||||||| |||| |||||||||||||||    
T  15796284 gacacctacacgacaccgacaattgtaattacactgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtg 15796383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 14223896 - 14223960
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtggtgtattcgtgcttcata 409  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    ||| |||||||||||||    
T  14223896 aaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtccgtgtctgtgttcgtgcttcata 14223960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 26492248 - 26492291
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||||| |||||||||||||||||| ||||||||||||    
T  26492248 aaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 26508163 - 26508083
Alignment:
Q  308 cgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||| ||||||||||||||| |||||| |       ||||||||||||||||| |||||||||| ||||| |||||||||    
T  26508163 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccg 26508083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 24205084 - 24205130
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  24205084 aaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 24205130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 25064925 - 25064879
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||    
T  25064925 aaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtccggtg 25064879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 3865599 - 3865635
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3865599 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 3865635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 4987282 - 4987363
Alignment:
Q  293 acaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgt 374  Q
    ||||||| ||| || | ||| ||||||||||||||| |||||| |       ||||||||||||||||||||||||||||||    
T  4987282 acaccgacacgtcaccaacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 4987363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 5441074 - 5441118
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccgg 389  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||    
T  5441074 aaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccgg 5441118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 8587021 - 8587110
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||||||||||| | |||||| |       |||||| ||| |||||||||||||||||||| ||||| |||||||||    
T  8587021 cgacaccgacacttgtaattacacttaattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtg 8587110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 10318077 - 10318113
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10318077 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 10318113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 33359777 - 33359741
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33359777 aaattattagctgtgtcagcgtgtcagtgtctgtgtc 33359741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 391
Target Start/End: Complemental strand, 55401134 - 55401045
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||||||||||| | |||||| |       |||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  55401134 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtg 55401045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 386
Target Start/End: Complemental strand, 11610623 - 11610496
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctg 357  Q
    ||||||||||||| ||||||||||||||||||||    | || |||||   |||| |||||| |||||||| |||||| |       ||||||||||| |    
T  11610623 aagcacggacactcctcagattaggcgtgtcccgatgtcggacacgac-ttgacacttgtaactacactgaattatgtgatttttttaaattattagcgg 11610525  T
Q  358 tgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    ||| ||||||||||| ||||||| |||||    
T  11610524 tgttggcgtgtcagtatctgtgttgtgtc 11610496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 3164068 - 3164114
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||| |||| || |||| |||||||||||||||    
T  3164068 aaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtg 3164114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 8383273 - 8383231
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtcc 387  Q
    ||||||||||| |||||||||||||| |||| |||||||||||    
T  8383273 aaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtcc 8383231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 14747577 - 14747547
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||||||||||||||||||||||||||||||    
T  14747577 aaattattagctgtgtcggcgtgtcagtgtc 14747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 21479134 - 21479104
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||||||||||||||||||||||||||||||    
T  21479134 aaattattagctgtgtcggcgtgtcagtgtc 21479104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 35994780 - 35994826
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||| ||||| ||||  ||||||||||||||    
T  35994780 aaattattagctgtgtcggcttgtcattgtccatgtcgtgtccggtg 35994826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 40052348 - 40052318
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||||||||||||||||||||||||||||||    
T  40052348 aaattattagctgtgtcggcgtgtcagtgtc 40052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 14216908 - 14216867
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    |||||||||| ||||||| |||||||||||| ||||||||||    
T  14216908 aaattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtc 14216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 14223037 - 14222996
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    |||||||||| ||||||| |||||||||||| ||||||||||    
T  14223037 aaattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtc 14222996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 17276735 - 17276698
Alignment:
Q  347 attattagctgtgtcggcgtgtcagtgtctgtgtcgtg 384  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  17276735 attattagctgtgtcggcgtatcagtgtctgtatcgtg 17276698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 23915969 - 23915929
Alignment:
Q  351 ttagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| ||| ||||||| ||||||||||||||||||    
T  23915969 ttagctgtgttggcatgtcagtttctgtgtcgtgtccggtg 23915929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 41961584 - 41961616
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtccc 290  Q
    ||||||||||||||||| |||||||||||||||    
T  41961584 aagcacggacacttctcggattaggcgtgtccc 41961616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 21522819 - 21522720
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||| |||||| ||||| ||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 21522720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 21533385 - 21533286
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||| |||||| ||||| ||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 21533286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 21542099 - 21542000
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||| |||||| ||||| ||||||||||||||| ||||||||       |||||||||| ||||||||| ||||| ||||||||||||||| ||||    
T  21542099 gacaccgacacgacaccgacacttgtaattacactgaattatgttatctttttaaattattagttgtgtcggcatgtcaatgtctgtgtcgtgtctggtg 21542000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 293 - 388
Target Start/End: Complemental strand, 41633803 - 41633708
Alignment:
Q  293 acaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||||||| ||||| ||||||||||||||| |||||| |       ||||||||||||||||||| |||||||| ||||||| |||||||    
T  41633803 acaccgatacgacaccgacatttgtaattacactgaattatgtaaatttttcaaattattagctgtgtcggagtgtcagtatctgtgtggtgtccg 41633708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 21191056 - 21191145
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||||||||||||| |||||| |       |||||||||||||||||||| |||||||||| |||||||||||||||    
T  21191056 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtg 21191145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 22013430 - 22013384
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  22013430 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 22013384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 15382493 - 15382447
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||    
T  15382493 aaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtg 15382447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 36642805 - 36642851
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  36642805 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 36642851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 13287366 - 13287488
Alignment:
Q  266 acacttctcagattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcg 365  Q
    ||||| ||||||||||||||||||  ||||  || |||||| ||||| ||||| ||||||||| |||||| |       ||||||||| |||||||| ||    
T  13287366 acactcctcagattaggcgtgtcc--gacag-gacacgacaccgacacttgtagttacactgaattatgtgattttttcaaattattatctgtgtcgacg 13287462  T
Q  366 tgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||| |||||| |||||||||||||||    
T  13287463 tgttagtgtccgtgtcgtgtccggtg 13287488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 391
Target Start/End: Complemental strand, 6247681 - 6247592
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||||||||||||| |||||| |       |||||||||| |||||||||||||||||||  || ||||||||||||    
T  6247681 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtg 6247592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 19552586 - 19552633
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtgg 392  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  19552586 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgttcggtgg 19552633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 19820437 - 19820483
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  19820437 aaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtg 19820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 24906307 - 24906390
Alignment:
Q  308 cgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||||||||||||| |||||| |       ||||||||| |||||| |||||||||||||  |||||||||||||||    
T  24906307 cgacacttgtaattacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgttcgtgtcgtgtccggtg 24906390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 31084388 - 31084309
Alignment:
Q  296 ccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||| |||||| ||||| ||||||||||| ||| |||||| |       |||||||||||||||||||||||||||||||    
T  31084388 ccgacacgacatcgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 31084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 15410491 - 15410532
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 346 - 383
Target Start/End: Complemental strand, 41995486 - 41995449
Alignment:
Q  346 aattattagctgtgtcggcgtgtcagtgtctgtgtcgt 383  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  41995486 aattattagttgtgtcggcgtgtcagtgtctgtgtcgt 41995449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 6326304 - 6326385
Alignment:
Q  309 gacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    |||| ||||||||||||||| |||||| |       |||||| ||||  |||||||||||||||||| ||||||||||||||    
T  6326304 gacacttgtaattacactgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccggt 6326385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 14674285 - 14674249
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14674285 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 14674249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 27144479 - 27144443
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27144479 aaattattagcggtgtcggcgtgtcagtgtctgtgtc 27144443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 30135329 - 30135286
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||| |||||||||||||| || |||||||||||||||    
T  30135329 aaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtccg 30135286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 19579717 - 19579671
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||||| |||||||| |||| || |||||||    
T  19579717 aaattattagctgtgtcggcgtatcagtgtccgtgttgtatccggtg 19579671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 43564995 - 43564961
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||||||| |||||||||||||||||    
T  43564995 aagcacggacacttctcggattaggcgtgtcccgg 43564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 6035499 - 6035463
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  6035499 aaattattagcggtgtcggcgtgtcagtgtctttgtc 6035463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 8420086 - 8420013
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtc 375  Q
    ||||| ||||| ||||||||||| ||| ||||||||       |||||||||||| ||||||||||||| ||||    
T  8420086 cgacaccgacacttgtaattacattgaattatgttattttttcaaattattagctatgtcggcgtgtcattgtc 8420013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 21711308 - 21711340
Alignment:
Q  358 tgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    ||||||| |||||||||||||||||||||||||    
T  21711308 tgtcggcatgtcagtgtctgtgtcgtgtccggt 21711340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 16766766 - 16766667
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||| |||||| ||||| ||||||||||||||| |||||| |       |||||||||||||||||||||||||||||||  ||||||||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtg 16766667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 391
Target Start/End: Original strand, 9107360 - 9107459
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||| |||||| ||||| ||||||||||||||| || ||| |       |||||||||||||||||||||||| |||||| |||||||||||||||    
T  9107360 gacaccgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtg 9107459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 12696389 - 12696297
Alignment:
Q  296 ccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||| ||||||  |||| ||||||||||||||| |||||| |       ||||||||||||||||||||||||||||||| ||||||||||||    
T  12696389 ccgacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 12696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 391
Target Start/End: Complemental strand, 34595193 - 34595104
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||||||||||||| |||||| |       |||||||||| ||||||||||||||| |||| |||||||||||||||    
T  34595193 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtg 34595104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 391
Target Start/End: Original strand, 8365512 - 8365608
Alignment:
Q  295 accgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| |||||| ||||| |||||||||||| || |||||| |       |||||||||| |||||||||||||||||||| |||||||||| ||||    
T  8365512 accgacacgacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtg 8365608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 16833324 - 16833281
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  16833324 aaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 7938132 - 7938086
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||    
T  7938132 aaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtg 7938086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 426557 - 426602
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  426557 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggt 426602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 3398635 - 3398595
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgt 385  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  3398635 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 3398595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 7977830 - 7977915
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtcc 387  Q
    ||||| ||||| ||||||||||||||| |||||| |       |||||||||||||||||||||||||||| ||  ||||||||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtcc 7977915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 9027194 - 9027150
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccgg 389  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  9027194 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 9027150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 8777016 - 8777059
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  8777016 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 3209397 - 3209352
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  3209397 aaattattagctgtgtcggcgtgtctgtgtc-gtgtcgtgtccggtg 3209352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 9025450 - 9025527
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgt 335  Q
    ||||||||||||||||| |||||||||||||||||   | || |||||| |||||  | |||||||||||| ||||||    
T  9025450 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaattatgt 9025527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 9658895 - 9658854
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  9658895 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 17841632 - 17841668
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||||||||||||||| |||||    
T  17841632 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 17841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 853902 - 853948
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| ||||||||||||||||  || |||||||||||||||    
T  853902 aaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtg 853948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 1681774 - 1681728
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| ||||||||||||| ||||| |||||||||| |||||    
T  1681774 aaattattagttgtgtcggcgtgttagtgtatgtgtcgtgttcggtg 1681728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 6389759 - 6389713
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||| | |||||||||||| |||||| |||||||||||||||    
T  6389759 aaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtg 6389713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 7378093 - 7378059
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg 292  Q
    |||||||||||||||||||||||| ||||||||||    
T  7378093 aagcacggacacttctcagattagccgtgtcccgg 7378059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 18803555 - 18803597
Alignment:
Q  346 aattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||| |||||||| ||||||||| |||||||||||||    
T  18803555 aattattagcggtgtcggcatgtcagtgtttgtgtcgtgtccg 18803597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 21068199 - 21068240
Alignment:
Q  347 attattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||| |||| |||||||| ||||||||||||||||||    
T  21068199 attattagcagtgttggcgtgtcggtgtctgtgtcgtgtccg 21068240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 381
Target Start/End: Complemental strand, 28152157 - 28152079
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||| ||||| ||||||||||||||| |||||| |       |||||||||||| |||||||||||||||||| |||||    
T  28152157 cgacaccgacacttgtaattacactgaattatgtgatttttc-aaattattagctttgtcggcgtgtcagtgtccgtgtc 28152079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 13851752 - 13851712
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgt 385  Q
    ||||||||||| |||||| |||||||||||| |||||||||    
T  13851752 aaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 13770756 - 13770664
Alignment:
Q  296 ccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||| |||||||||||| ||||||||||||||| |||||| |       |||||||||||||||||||||| |||||||| ||||||||||||    
T  13770756 ccgacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtcggcgtatcagtgtccgtgtcgtgtccg 13770664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 24339711 - 24339612
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||| |||||| ||||| ||||||||||||||| |||||| |       |||||||||||||||||||||||||| ||||  ||||||||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtg 24339612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 391
Target Start/End: Complemental strand, 27945101 - 27945011
Alignment:
Q  301 acgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||| ||||| ||||||||||||||| |||||| |       ||||||||||  ||||||||||||||||||| |||||||||||||||    
T  27945101 acgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 27945011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 381
Target Start/End: Original strand, 18215144 - 18215265
Alignment:
Q  260 gcacggacacttctcagattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtg 359  Q
    ||||||||||| |||||||||||||||||||||   | || |||||| ||||| |||||| |||||||  |||||| |       ||||||||||||| |    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcggacacgacaccgacacttgtaactacactgcattatgtgattttttcaaattattagctgcg 18215243  T
Q  360 tcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||| |||||| |||||    
T  18215244 tcggcgtgttagtgtccgtgtc 18215265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 24105694 - 24105651
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  24105694 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 24105651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 5236002 - 5235960
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtcc 387  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  5236002 aaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 13557787 - 13557833
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| | |||||||||||||||||||||||| |||||||||    
T  13557787 aaattattagttttgtcggcgtgtcagtgtctgtgtcatgtccggtg 13557833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 11722141 - 11722186
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  11722141 aaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggt 11722186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 21864822 - 21864757
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg-gtgtattcgtgcttcata 409  Q
    ||||||||||||||||| | ||||| ||||| |||||||||||| || |||||| |||||||||||    
T  21864822 aaattattagctgtgtccgtgtgtccgtgtccgtgtcgtgtccgatgtgtgtatccgtgcttcata 21864757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 22484041 - 22484004
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcg 382  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22484041 aaattattagcggtgtcggcgtgtcagtgtctgtgtcg 22484004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 4793876 - 4793836
Alignment:
Q  348 ttattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  4793876 ttattagctgtatcgacgtgtcagtgtctgtgtcgtgtccg 4793836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 380
Target Start/End: Original strand, 7197340 - 7197375
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgt 380  Q
    |||||||||||||||||||||||||| |||||||||    
T  7197340 aaattattagctgtgtcggcgtgtcaatgtctgtgt 7197375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 11061119 - 11061162
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||    
T  11061119 aaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccg 11061162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 21560572 - 21560529
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgt 335  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  21560572 gacaccgatacgacaccgacacttgtaattacactgaattatgt 21560529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 598322 - 598288
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||||||| |||||||||||||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccgg 598288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 26329425 - 26329467
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtcc 387  Q
    ||||||||| |  ||||||||||||||||||||||||||||||    
T  26329425 aaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtcc 26329467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 26733320 - 26733274
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||| |||||| |||||||||||| |||||||||| ||||    
T  26733320 aaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtctggtg 26733274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 43027512 - 43027554
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtcc 387  Q
    ||||||||||||| |||| |||||||||||| |||||||||||    
T  43027512 aaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtcc 43027554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 43250009 - 43249963
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||| | ||||||||||||||||||| ||||| |||||||||    
T  43250009 aaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtg 43249963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 29812603 - 29812636
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccg 291  Q
    ||||||||||||||||| ||||||||||||||||    
T  29812603 aagcacggacacttctcggattaggcgtgtcccg 29812636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 25791669 - 25791633
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    |||| |||||| |||||||||||||||||||||||||    
T  25791669 aaataattagcggtgtcggcgtgtcagtgtctgtgtc 25791633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 22652045 - 22651946
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||| |||||| ||||| ||||||||| | ||| |||||| |       ||||||||||||||||||||||||||||||| |||||||||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 22651946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 25566944 - 25566841
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctg 357  Q
    |||||| |||||| ||| |||||||||||||||||||||| | |||||| ||||| ||||||||||||||| |||||| |       |||||||||||||    
T  25566944 aagcacagacactcctcggattaggcgtgtcccggacaccaacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctg 25566845  T
Q  358 tgtc 361  Q
    ||||    
T  25566844 tgtc 25566841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 29510347 - 29510393
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  29510347 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 29510393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 4673468 - 4673511
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4673468 aaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 4673511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 22197785 - 22197831
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  22197785 aaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtg 22197831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 258 - 391
Target Start/End: Original strand, 13436915 - 13437053
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg-----acaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattatt 352  Q
    |||||| |||||| ||  |||||||||||||||||     ||||||| |||||| ||||| |||| |||||  ||| |||||| |       ||||||||    
T  13436915 aagcacagacactccttggattaggcgtgtcccggtgtcgacaccgacacgacaccgacacttgttattaccatgaattatgtgattttttcaaattatt 13437014  T
Q  353 agctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||||||  |||| |||||||||    
T  13437015 agctgtgtcggcgtgtcagtgtccatgtcatgtccggtg 13437053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 391
Target Start/End: Original strand, 24362189 - 24362291
Alignment:
Q  289 ccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||| ||||||  ||||  | |||||||||||| |||||| |       ||||||||||| ||||||||||||| ||||||||||||| ||||    
T  24362189 ccggacaccgacacgacattgacacatataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccg 24362288  T
Q  389 gtg 391  Q
    |||    
T  24362289 gtg 24362291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 24669492 - 24669406
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||| ||||| ||||||||||||||| |||||| |       ||||||||| | ||||| ||||||||||||||||||||||||||    
T  24669492 cgacaccgacacttgtaattacactgaattatgtaatttcctcaaattattaacggtgtcagcgtgtcagtgtctgtgtcgtgtccg 24669406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 25192390 - 25192455
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg-gtgtattcgtgcttcata 409  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||   ||||||||||||||||    
T  25192390 aaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcata 25192455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 22596041 - 22595981
Alignment:
Q  314 ttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgt 374  Q
    ||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||    
T  22596041 ttgtaattacactgaattatgttatttttttaaattattagctgtgtcggcgtgtcagtgt 22595981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 412
Target Start/End: Complemental strand, 20873128 - 20873024
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtggtgtattcgt 401  Q
    ||||| ||||| ||||||||||||| | |||||| |       ||||||||| || |||||||||||||||||| |||||||||||      ||||||||    
T  20873128 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtcc------gtattcgt 20873035  T
Q  402 gcttcataata 412  Q
    |||||||||||    
T  20873034 gcttcataata 20873024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 4298929 - 4298972
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||    
T  4298929 aaattattaactgtgtcggcgtgttagtatctgtgtcgtgtccg 4298972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 926831 - 926877
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||  |||| |||||||||||||| |||||||||||||||    
T  926831 aaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtg 926877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 15816063 - 15816097
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||||||| |||||||||||||||||    
T  15816063 aagcacggacacttctcggattaggcgtgtcccgg 15816097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 24858025 - 24857979
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||| |||||||||||||||  |||| |||||||||||||||    
T  24858025 aaattattaactgtgtcggcgtgtccatgtccgtgtcgtgtccggtg 24857979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 27213563 - 27213518
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    ||||||||||| ||||||||||||| || || ||||||||||||||    
T  27213563 aaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccggt 27213518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 39820542 - 39820509
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccg 291  Q
    ||||||||||||||||| ||||||||||||||||    
T  39820542 aagcacggacacttctcggattaggcgtgtcccg 39820509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 41838166 - 41838207
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  41838166 aaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtc 41838207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 36450797 - 36450833
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    |||||||||| |||||||||||||||||||| |||||    
T  36450797 aaattattagttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 276 - 391
Target Start/End: Complemental strand, 20253 - 20142
Alignment:
Q  276 gattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||||||||||||||    ||||| ||||||  |||| ||||||||||||||| |||||| |       |||||||||||||||||||||||||| ||||    
T  20253 gattaggcgtgtccc----accgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtc 20158  T
Q  376 tgtgtcgtgtccggtg 391  Q
     |||||||||||||||    
T  20157 cgtgtcgtgtccggtg 20142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 391
Target Start/End: Complemental strand, 21945562 - 21945473
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||||||||||||| |||||| |       |||||||||||||||||||| |||||||||||||||| |||||||||    
T  21945562 cgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtg 21945473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 23292986 - 23293075
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||| ||||||||| ||||| |||||| |       |||||||||||||||||||||||||| |||| |||||||||||||||    
T  23292986 cgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtg 23293075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 391
Target Start/End: Complemental strand, 19482734 - 19482638
Alignment:
Q  295 accgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| |||||| | ||| |||||||||||| || |||||| |       |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  19482734 accgacacgacaccaacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtg 19482638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 28084537 - 28084491
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  28084537 aaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtg 28084491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 5414220 - 5414261
Alignment:
Q  350 attagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  5414220 attagctgtgtcggcgtgtccgtgtccgtgtcgtgtccggtg 5414261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 11596302 - 11596427
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcc------cggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattat 351  Q
    ||||||||||||| ||||||||||||||||||      ||||||  || |||||| | ||| ||||||||||||||| |||||| |       |||||||    
T  11596302 aagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacacgacacctacacttgtaattacactgaattatgtgattttttcaaattat 11596401  T
Q  352 tagctgtgtcggcgtgtcagtgtctg 377  Q
    ||||| ||| ||||| ||||||||||    
T  11596402 tagctttgttggcgtatcagtgtctg 11596427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 381
Target Start/End: Complemental strand, 30299043 - 30298926
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnn-aaattattagct 356  Q
    ||||||||||||| ||| |||||| ||||||||||        |||||| ||||| ||||||||||||||| |||||| |        ||||||||||||    
T  30299043 aagcacggacactcctcggattagacgtgtcccggc-------acgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagct 30298951  T
Q  357 gtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||| |||||    
T  30298950 gtgtcggcgtgtcagtgtccgtgtc 30298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 381
Target Start/End: Complemental strand, 30327911 - 30327794
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccggacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnn-aaattattagct 356  Q
    ||||||||||||| ||| |||||| ||||||||||        |||||| ||||| ||||||||||||||| |||||| |        ||||||||||||    
T  30327911 aagcacggacactcctcggattagacgtgtcccggc-------acgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagct 30327819  T
Q  357 gtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||| |||||    
T  30327818 gtgtcggcgtgtcagtgtccgtgtc 30327794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 847967 - 847923
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccgg 389  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||    
T  847967 aaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccgg 847923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 28720892 - 28720828
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtggtgtattcgtgcttcata 409  Q
    |||||||||||||||||||| |||||||||  ||||||||||||    ||||| |||||||||||    
T  28720892 aaattattagctgtgtcggcatgtcagtgttcgtgtcgtgtccgtgtctgtatacgtgcttcata 28720828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 3947809 - 3947852
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||||||||||||| |||| |||||||||| |||||||    
T  3947809 aaattattagctgtgtcggcatgtccgtgtctgtgtggtgtccg 3947852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 40481653 - 40481610
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  40481653 aaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtccg 40481610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 49431041 - 49430998
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||||||||||||||||||| |||| | ||||||||||    
T  49431041 aaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccg 49430998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 14126154 - 14126196
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtcc 387  Q
    ||||||||| | |||||||||||| ||||||||||||||||||    
T  14126154 aaattattaacagtgtcggcgtgttagtgtctgtgtcgtgtcc 14126196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 35158028 - 35158074
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| || ||||||||||||||||| |||| ||||||||||    
T  35158028 aaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtccggtg 35158074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 11651177 - 11651218
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  11651177 aaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtc 11651218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 12708162 - 12708121
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  12708162 aaattattagttgtgtctgcgtgtcagtgtctgcgtcgtgtc 12708121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 18844428 - 18844470
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccggacaccgatac 302  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||    
T  18844428 aagcacggacacttctcggattaggcgtgtcc--gacaccgatac 18844470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 752977 - 753041
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtggtgtattcgtgcttcata 409  Q
    ||||||||||||||||||| |||| || || |||||||||||||    ||||| |||||||||||    
T  752977 aaattattagctgtgtcggtgtgttagagtatgtgtcgtgtccgtgtctgtatccgtgcttcata 753041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 8423665 - 8423697
Alignment:
Q  260 gcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||||| |||||||||||||||||    
T  8423665 gcacggacacttctccgattaggcgtgtcccgg 8423697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 24543997 - 24543965
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctg 377  Q
    |||||||||| ||||||||||||||||||||||    
T  24543997 aaattattagttgtgtcggcgtgtcagtgtctg 24543965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 8814 - 8768
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  8814 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 8768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 241610 - 241564
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  241610 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 241564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 241719 - 241685
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||||||| |||||||||||||||||    
T  241719 aagcacggacacttctcggattaggcgtgtcccgg 241685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 21624282 - 21624236
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtg 21624236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 21782861 - 21782926
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg-gtgtattcgtgcttcata 409  Q
    ||||||||||| |||||||||||||||||| |||||||||||| |||  |||||||||||||||||    
T  21782861 aaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtattcgtgcttcata 21782926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 36756343 - 36756430
Alignment:
Q  301 acgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||| ||||| || |||||||||||| ||||||||       |||||||||| ||||||| |||||||||||||||||||| ||||    
T  36756343 acgacaccgacacttataattacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgtcgtatccg 36756430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 391
Target Start/End: Complemental strand, 15657924 - 15657834
Alignment:
Q  301 acgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||| ||||| ||||||||||||||| |||||| |       |||||||||| || |||||||||| |||||| |||||||||||||||    
T  15657924 acgacaccgacatttgtaattacactgaattatgtgatttttacaaattattagttgagtcggcgtgttagtgtccgtgtcgtgtccggtg 15657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 6940271 - 6940233
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgt 383  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6940271 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 6940233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 19536441 - 19536487
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||||    
T  19536441 aaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtg 19536487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 20539717 - 20539759
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtcc 387  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  20539717 aaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtcc 20539759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 381
Target Start/End: Complemental strand, 37559036 - 37558957
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||| ||||| ||||||||||| ||| |||||| |       ||||||||||||||||||||||||||||||| |||||    
T  37559036 cgacaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtc 37558957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 382
Target Start/End: Complemental strand, 20473381 - 20473301
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcg 382  Q
    ||||| ||||| ||||||||||||||| |||| | |       |||||||||| ||||||||| |||||||||||||||||    
T  20473381 cgacatcgacacttgtaattacactgaattatatgagttttttaaattattagttgtgtcggcatgtcagtgtctgtgtcg 20473301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 21374706 - 21374778
Alignment:
Q  309 gacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    |||| ||||||||||||||| |||||| |       |||||||||||||||||||||||| |||||| |||||    
T  21374706 gacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtc 21374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 23058388 - 23058423
Alignment:
Q  257 taagcacggacacttctcagattaggcgtgtcccgg 292  Q
    |||||||||||||||||| |||||||||||||||||    
T  23058388 taagcacggacacttctcggattaggcgtgtcccgg 23058423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 24894405 - 24894370
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgt 380  Q
    ||||||||||||||||||||||||||||||| ||||    
T  24894405 aaattattagctgtgtcggcgtgtcagtgtccgtgt 24894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 11223798 - 11223832
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  11223798 aagcacggacactcctcagattaggcgtgtcccgg 11223832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 18276537 - 18276491
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||| |||||||| | ||||||||||| ||||||||||||    
T  18276537 aaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtg 18276491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 27460042 - 27460012
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||||||||||||||||||||||||||||||    
T  27460042 aaattattagctgtgtcggcgtgtcagtgtc 27460012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 28596483 - 28596445
Alignment:
Q  350 attagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  28596483 attagctgtgtcggcgtgtcattgtccgtgtcgtgtccg 28596445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 375
Target Start/End: Original strand, 38117202 - 38117232
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||||||||||||||||||||||||||||||    
T  38117202 aaattattagctgtgtcggcgtgtcagtgtc 38117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 14996267 - 14996308
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    |||||||||||||||||||| |||||||||| ||||| ||||    
T  14996267 aaattattagctgtgtcggcttgtcagtgtccgtgtcatgtc 14996308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 21616778 - 21616737
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||    
T  21616778 aaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 23718042 - 23717978
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtggtgtattcgtgcttcata 409  Q
    ||||||||||| ||||||| ||||||||||| ||||| ||||||    ||||| |||||||||||    
T  23718042 aaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtgtctgtatccgtgcttcata 23717978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 24105714 - 24105650
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtggtgtattcgtgcttcata 409  Q
    ||||||||||| ||||||| ||||||||||| ||||| ||||||    ||||| |||||||||||    
T  24105714 aaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtgtctgtatccgtgcttcata 24105650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 19058856 - 19058943
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtc-agtgtctgtgtcgtgtccg 388  Q
    ||||| ||||| ||||||||||||||| ||||||||       ||||||||||||||||||||||||| ||||| |||||||||||||    
T  19058856 cgacaccgacacttgtaattacactgaattatgttatctttttaaattattagctgtgtcggcgtgtcaagtgtgtgtgtcgtgtccg 19058943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 47989566 - 47989473
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    |||||||| |||||| ||||| ||||||||||||||| |||||| |       |||||||||  |||||||||||||||||||||||||||||||    
T  47989566 gacaccgacacgacaccgacacttgtaattacactgaattatgtgatttttttaaattattat-tgtgtcggcgtgtcagtgtctgtgtcgtgtc 47989473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 5376490 - 5376587
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccgg 389  Q
    |||| ||| |||||| ||||| || |||||||||||| ||||||||       ||||||||||| |||||||||||| |||||| |||||||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgg 5376587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 5944297 - 5944254
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  5944297 aaattattagctgtggcggcgtgtcagtgtctgtgtcgtgtccg 5944254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 14359564 - 14359607
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  14359564 aaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccg 14359607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 388
Target Start/End: Original strand, 48450593 - 48450673
Alignment:
Q  308 cgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||| ||||||||||||| | ||||||||       |||||||||||||||| |||||||||||||| ||||||||||||    
T  48450593 cgacacttgtaattacactaaattatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 398808 - 398854
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  398808 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 398854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 292 - 391
Target Start/End: Original strand, 6612161 - 6612260
Alignment:
Q  292 gacaccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||| ||| |||||| ||||| ||||||||||||||| |||||| |       ||||||||| |||| ||||||||||| |||| |||||||||||||||    
T  6612161 gacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattattaactgtatcggcgtgtcattgtccgtgtcgtgtccggtg 6612260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 40917767 - 40917721
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  40917767 aaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtg 40917721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 48040505 - 48040551
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  48040505 aaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 48040551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 398738 - 398777
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccggacacc 297  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  398738 aagcacggacacttcttagattaggcgtgtcccggacacc 398777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 1262900 - 1262855
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||    
T  1262900 aaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccggt 1262855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 1486703 - 1486797
Alignment:
Q  296 ccgatacgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    |||| |||||| ||||| || |||||||||||| |||||| |       ||||||||||||||||| |||||||||| || ||||||| ||||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccggt 1486797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 10577783 - 10577824
Alignment:
Q  350 attagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  10577783 attagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtg 10577824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 18556499 - 18556535
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18556499 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 18556535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 46348426 - 46348462
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46348426 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 2896164 - 2896207
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||    
T  2896164 aaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccg 2896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 41877470 - 41877554
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtc 386  Q
    ||||| ||||| ||||||||||||| | |||||| |       ||||||||||| ||||||||||  ||||||||||||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcggcgtaccagtgtctgtgtcgtgtc 41877554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 5927383 - 5927429
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||||||    
T  5927383 aaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtg 5927429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 13011259 - 13011305
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||| |||||||||  ||||||||| |||||    
T  13011259 aaattattagctgtgtcggcatgtcagtgttcgtgtcgtgttcggtg 13011305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 16812670 - 16812636
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  16812670 aagcacggacactcctcagattaggcgtgtcccgg 16812636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 5898311 - 5898352
Alignment:
Q  347 attattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  5898311 attattagcggtgtcggcgtctcagtgtctgtgtcatgtccg 5898352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 16927228 - 16927268
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgt 385  Q
    |||||||||||| || || ||||||||||||||||||||||    
T  16927228 aaattattagctatgccgacgtgtcagtgtctgtgtcgtgt 16927268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 18556390 - 18556422
Alignment:
Q  258 aagcacggacacttctcagattaggcgtgtccc 290  Q
    ||||||||||||||||| |||||||||||||||    
T  18556390 aagcacggacacttctcggattaggcgtgtccc 18556422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 26830703 - 26830667
Alignment:
Q  256 ttaagcacggacacttctcagattaggcgtgtcccgg 292  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  26830703 ttaagcacggacactcctctgattaggcgtgtcccgg 26830667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 29144401 - 29144437
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    |||||||||||||||||||||| |||||||| |||||    
T  29144401 aaattattagctgtgtcggcgtatcagtgtcagtgtc 29144437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 36878477 - 36878441
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  36878477 aaattattagcggtgtcggcgtgtcagtgtctatgtc 36878441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 178862 - 178908
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||    
T  178862 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 178908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 225311 - 225357
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  225311 aaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtg 225357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 46741 - 46655
Alignment:
Q  302 cgacaacgacagttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    ||||| ||||| ||||||||||||||| |||||| |       ||||||||| |||||||||||||||| |||| ||||||||||||    
T  46741 cgacaccgacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccg 46655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 23433 - 23393
Alignment:
Q  348 ttattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  23433 ttattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 23393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 23523 - 23483
Alignment:
Q  348 ttattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||| ||||||||| |||||||||| |||||||||||||    
T  23523 ttattaactgtgtcggtgtgtcagtgtatgtgtcgtgtccg 23483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 51858 - 51791
Alignment:
Q  314 ttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtcagtgtctgtgtc 381  Q
    ||||||||||||||| |||||| |       ||||||||||||||||||||||||||||||| |||||    
T  51858 ttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 51791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 19592 - 19549
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 388  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  19592 aaattattagttgtatcggcgtgtcagtgtcagtgtcgtgtccg 19549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 13416 - 13370
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| |||||||||||||||||||| ||||| | |||||||    
T  13416 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtg 13370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 21911 - 21957
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||| |||||||||||||||||||| ||||| | |||||||    
T  21911 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtg 21957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 33375 - 33430
Alignment:
Q  314 ttgtaattacactgagttatgttannnnnnnaaattattagctgtgtcggcgtgtc 369  Q
    ||||||||||||||| ||||||||       |||||||||||||||||||||||||    
T  33375 ttgtaattacactgaattatgttattttttcaaattattagctgtgtcggcgtgtc 33430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 71739 - 71709
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtc 375  Q
    |||||||||||||||||||||||||||||||    
T  71739 aaattattagctgtgtcggcgtgtcagtgtc 71709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 9909 - 9868
Alignment:
Q  350 attagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtg 391  Q
    |||||||||||||||||||| |||||  ||||||||||||||    
T  9909 attagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtg 9868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 4927 - 4991
Alignment:
Q  345 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgtccggtggtgtattcgtgcttcata 409  Q
    ||||||||||||||||||| |||| || || |||||||||||||    ||||| |||||||||||    
T  4927 aaattattagctgtgtcggtgtgttagagtatgtgtcgtgtccgtgtctgtatccgtgcttcata 4991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 390
Target Start/End: Complemental strand, 2602 - 2570
Alignment:
Q  358 tgtcggcgtgtcagtgtctgtgtcgtgtccggt 390  Q
    ||||||| |||||||||||||||||||||||||    
T  2602 tgtcggcatgtcagtgtctgtgtcgtgtccggt 2570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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