View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_low_21 (Length: 304)

Name: NF1466_low_21
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_low_21
NF1466_low_21
[»] chr2 (7 HSPs)
chr2 (6-290)||(14737530-14737817)
chr2 (215-277)||(14744154-14744216)
chr2 (86-206)||(32517816-32517937)
chr2 (86-206)||(636973-637094)
chr2 (87-154)||(816407-816475)
chr2 (144-201)||(16382209-16382266)
chr2 (138-206)||(37103331-37103399)
[»] chr8 (3 HSPs)
chr8 (88-209)||(39709624-39709746)
chr8 (114-209)||(40418134-40418229)
chr8 (87-144)||(24197827-24197885)
[»] chr7 (6 HSPs)
chr7 (86-209)||(12645296-12645420)
chr7 (120-206)||(21421985-21422071)
chr7 (97-201)||(6328183-6328288)
chr7 (86-201)||(36251664-36251780)
chr7 (86-206)||(46021429-46021550)
chr7 (87-162)||(16842047-16842123)
[»] chr1 (8 HSPs)
chr1 (113-206)||(13979744-13979837)
chr1 (88-201)||(11080961-11081075)
chr1 (130-206)||(49632564-49632640)
chr1 (114-206)||(7204535-7204627)
chr1 (88-191)||(12176520-12176624)
chr1 (124-206)||(17540113-17540195)
chr1 (86-191)||(50248053-50248158)
chr1 (120-201)||(236584-236665)
[»] chr4 (4 HSPs)
chr4 (86-206)||(24870606-24870727)
chr4 (86-206)||(46107402-46107523)
chr4 (122-209)||(26186173-26186259)
chr4 (174-206)||(9747352-9747384)
[»] chr3 (8 HSPs)
chr3 (113-194)||(50735828-50735909)
chr3 (113-194)||(50776946-50777027)
chr3 (120-162)||(40878216-40878258)
chr3 (86-162)||(8507985-8508061)
chr3 (138-191)||(36540129-36540182)
chr3 (89-201)||(54923500-54923613)
chr3 (87-206)||(30703100-30703219)
chr3 (113-201)||(33095992-33096080)
[»] chr6 (2 HSPs)
chr6 (85-206)||(9297766-9297888)
chr6 (173-206)||(2018848-2018881)
[»] chr5 (3 HSPs)
chr5 (114-208)||(4429969-4430061)
chr5 (86-206)||(30527991-30528112)
chr5 (86-206)||(30568331-30568452)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 14737530 - 14737817
Alignment:
Q  6 cataggtcgacatcttagacgtatcaacnnnnnnncattaatgataccctttatttttagcaataacgatannnnnnnng-ggtagatagatgagatggc 104  Q
    ||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||     
T  14737530 cataggtcgacatcttagatgtatcaacaaagaaacattaatgataccctttatttttagcaataacgatattttttttttggtagatagatgagatggt 14737629  T
Q  105 aaaaccatgtaaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatct 204  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||| |||| |||||||||||| |||||||||||| ||||||||    
T  14737630 aaaaccatgtaaactctcacacacaaagtggatatatcagggttcgaacctcaatcatcacgtctggtctaacaattttgacatttttacccgttgatct 14737729  T
Q  205 agaacacttct--tatatctatatagttggtattgacatttttatattgcaaaaacatttaagtgatagtaattaattaggcattatt 290  Q
    ||||| ||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737730 agaaccctttttatatatatatatagttggtattgacatttttatattgcaaaaacatttaagtgatagtaattaattaggcattatt 14737817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 14744154 - 14744216
Alignment:
Q  215 ttatatctatatagttggtattgacatttttatattgcaaaaacatttaagtgatagtaatta 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14744154 ttatatctatatagttggtattgacatttttatattgcaaaaacatttaagtgataataatta 14744216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 32517816 - 32517937
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    ||||||||||| ||||||||||  |||  ||||||| |||||| |||||||| ||| ||||||| ||||||| ||||| | ||| || ||||||||||||    
T  32517816 ggtagatagataagatggcaaagtcatcataaactcacacacacaaagtggaggtaccggggttcgaacctcggtcatgacgtccagcctaacaatttcg 32517915  T
Q  185 acatttttaccagttgatctag 206  Q
    ||||||||| ||||||| ||||    
T  32517916 acatttttatcagttgaactag 32517937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 637094 - 636973
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| |||||||||||| |||  ||||||| |||||| |||||||| | |  |  ||||||||| || |||| | |||  ||||||||||||||    
T  637094 ggtagatagacgagatggcaaaatcatcataaactcacacacacaaagtggaggaacagatgtttgaaccccaatcataacgtccggtctaacaatttcg 636995  T
Q  185 acatttttaccagttgatctag 206  Q
    ||||||||||| ||||| ||||    
T  636994 acatttttaccggttgaactag 636973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 816475 - 816407
Alignment:
Q  87 gtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacc 154  Q
    ||||||||| ||||||||||||||||  ||||||| |||||| |||||||||||| ||||||| |||||    
T  816475 gtagatagacgagatggcaaaaccatcataaactcacacacacaaagtggatgtaccggggttcgaacc 816407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 16382266 - 16382209
Alignment:
Q  144 gggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttga 201  Q
    ||||| ||||||  ||||| |||||| ||||||||||||||||||||||| |||||||    
T  16382266 gggttcgaaccttggtcatgatgtctggtctaacaatttcgacatttttatcagttga 16382209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 37103399 - 37103331
Alignment:
Q  138 gtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctag 206  Q
    |||||||||||  |||| | ||||| |||||  ||||||||||||||||||||||  ||||||| ||||    
T  37103399 gtatcggggttcaaaccccggtcatgatgtccggtctaacaatttcgacatttttgtcagttgagctag 37103331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 39709624 - 39709746
Alignment:
Q  88 tagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgac 186  Q
    ||||||||| |||||||||||||||  ||||||| |||| |||||||||| ||||| | ||||||||| ||||||  | |||  ||||||||||||||||    
T  39709624 tagatagataagatggcaaaaccatcataaactcacacatataaagtggaggtatcagagtttgaaccccagtcacgacgtccggtctaacaatttcgac 39709723  T
Q  187 atttttaccagttgatctagaac 209  Q
    ||||||| ||||||| |||||||    
T  39709724 atttttagcagttgagctagaac 39709746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 40418229 - 40418134
Alignment:
Q  114 taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctagaac 209  Q
    ||||||| ||||||||||||||| ||||||||||| ||||  | ||||| | |||| | |||||||||||  |||||||||||||||| |||||||    
T  40418229 taaactcacacacataaagtggaggtatcggggttcgaactccggtcatgacgtctggcctaacaatttcagcatttttaccagttgagctagaac 40418134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 24197827 - 24197885
Alignment:
Q  87 gtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcgg 144  Q
    ||||||||| |||||| |||||||||  ||||||| ||||||||||||||| |||||||    
T  24197827 gtagatagaagagatgacaaaaccatcataaactcacacacataaagtggaggtatcgg 24197885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 12645296 - 12645420
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| |||||| |||||||||  ||||| | ||||||||||||||| |||  |||||| ||||||| ||||| | |||  | ||||||||||||    
T  12645296 ggtagatagacgagatgacaaaaccatcataaacccacacacataaagtggaggtacaggggttcgaacctcggtcattacgtccggcctaacaatttcg 12645395  T
Q  185 acatttttaccagttgatctagaac 209  Q
    ||||||||  ||||||| |||||||    
T  12645396 acatttttggcagttgaactagaac 12645420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 21422071 - 21421985
Alignment:
Q  120 ctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctag 206  Q
    ||||||||||||||||| ||||| |||||  |||||||||||| | |||   |||||||||||||| ||||||||||||||| ||||    
T  21422071 ctcacacataaagtggaggtatcagggttcaaacctcagtcatgacgtccgatctaacaatttcgatatttttaccagttgaactag 21421985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 6328183 - 6328288
Alignment:
Q  97 gagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttacc 195  Q
    |||||| |||||||||  ||||||| ||||||||||||||| ||||||||||| |||||  |||||| | ||| |  |||||||||| ||||||||| ||    
T  6328183 gagatgacaaaaccatcataaactcacacacataaagtggaggtatcggggttcgaaccctagtcatgacgtccaacctaacaattttgacatttttgcc 6328282  T
Q  196 agttga 201  Q
    ||||||    
T  6328283 agttga 6328288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 36251780 - 36251664
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| ||||||||||||||||  ||||||| |||||||||||||||  || ||||||| ||||||| | ||| | |||  | |||||||||||     
T  36251780 ggtagatagacgagatggcaaaaccatcataaactcacacacataaagtggaaataccggggttcgaacctcggccatgacgtccggcctaacaatttca 36251681  T
Q  185 acatttttaccagttga 201  Q
     |||||||  |||||||    
T  36251680 gcatttttgtcagttga 36251664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 46021429 - 46021550
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| ||||||||||| ||||  ||||||| |||||| ||| |||| ||| ||||||| ||||| | ||||| |  ||  | ||||||||||||    
T  46021429 ggtagatagaagagatggcaaagccatcataaactcacacacacaaaatggaggtaccggggttcgaaccccggtcatgacatccggcctaacaatttcg 46021528  T
Q  185 acatttttaccagttgatctag 206  Q
     |||||||| ||||||| ||||    
T  46021529 gcatttttatcagttgagctag 46021550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 16842047 - 16842123
Alignment:
Q  87 gtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcat 162  Q
    ||||||||| ||||| | ||||||||  |||||||  |||||||||||||| ||||||||||| ||| |||||||||    
T  16842047 gtagatagacgagatagaaaaaccatcataaactcatacacataaagtggaggtatcggggttcgaatctcagtcat 16842123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 13979744 - 13979837
Alignment:
Q  113 gtaaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctag 206  Q
    |||||||| |||||| |||||||| || | ||| || ||||||||||||| | ||||||||| |||||||||||||||||  ||||||| ||||    
T  13979744 gtaaactcacacacacaaagtggaggtgttgggattcgaacctcagtcatgacgtctagtctgacaatttcgacatttttgtcagttgaactag 13979837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 11080961 - 11081075
Alignment:
Q  88 tagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgac 186  Q
    |||||||| |||||| |||||||||  || ||||  |||||||||||||| ||||||||||||||||| | ||||| | |||  | ||| ||||||| ||    
T  11080961 tagatagacgagatgacaaaaccatcatatactcatacacataaagtggaggtatcggggtttgaaccccggtcataacgtccggcctagcaatttcaac 11081060  T
Q  187 atttttaccagttga 201  Q
    |||||| ||||||||    
T  11081061 atttttgccagttga 11081075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 49632640 - 49632564
Alignment:
Q  130 aagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctag 206  Q
    ||||||| ||||||||||| ||||||| ||||| |  || || |||||||||||| |||||||||||||||| ||||    
T  49632640 aagtggaggtatcggggttcgaacctcggtcatgacatccagcctaacaatttcggcatttttaccagttgaactag 49632564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 7204535 - 7204627
Alignment:
Q  114 taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctag 206  Q
    ||||||| || ||| |||||||| ||||||||||| ||||| | ||||| ||||   | |||||||||||| ||||||| |||||||| ||||    
T  7204535 taaactcacatacacaaagtggaggtatcggggttcgaaccccggtcatgatgttcggcctaacaatttcggcatttttgccagttgagctag 7204627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 12176624 - 12176520
Alignment:
Q  88 tagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgac 186  Q
    |||||||||||||||||||| ||||  |||  || ||||||||||||||| ||| |||| |||||||| || |||| | |||   |||| ||||||||||    
T  12176624 tagatagatgagatggcaaagccatcataatttcacacacataaagtggaggtaccgggatttgaaccccaatcatgacgtccgatctatcaatttcgac 12176525  T
Q  187 atttt 191  Q
    |||||    
T  12176524 atttt 12176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 17540113 - 17540195
Alignment:
Q  124 cacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctag 206  Q
    |||| ||||| || ||||||||||| ||||| | ||||| | |||| | |||||||||||| ||||||||| |||||| ||||    
T  17540113 cacacaaagttgaggtatcggggttcgaaccccggtcatgacgtctggcctaacaatttcggcatttttactagttgagctag 17540195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 50248158 - 50248053
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| || |||||||| ||||  ||||||| |||||| || ||||| ||||||||||| ||||||| ||||| |  ||  | ||||||||||||    
T  50248158 ggtagatagacgaaatggcaaagccattataaactcacacacacaa-gtggaggtatcggggttcgaacctcggtcatgacatccggcctaacaatttcg 50248060  T
Q  185 acatttt 191  Q
    |||||||    
T  50248059 acatttt 50248053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 236665 - 236584
Alignment:
Q  120 ctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttga 201  Q
    ||||||||||||||| | ||| ||||||| ||||| | ||||| | |||  | ||||||||||||||||||||  |||||||    
T  236665 ctcacacataaagtgaaggtaccggggttcgaaccccggtcatgacgtccggcctaacaatttcgacatttttgtcagttga 236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 24870727 - 24870606
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||| | ||||||||||| ||||  ||||||| ||||| ||||||||| ||| || |||| ||||||| ||||| | |||  | ||||||||||||    
T  24870727 ggtagataaacgagatggcaaagccatcataaactcacacacgtaaagtggaggtaccgaggttcgaacctcggtcattacgtccggcctaacaatttcg 24870628  T
Q  185 acatttttaccagttgatctag 206  Q
     ||||||| |||||||| ||||    
T  24870627 gcatttttgccagttgagctag 24870606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 46107523 - 46107402
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| ||| |||||||  |||  |||| || ||||||||||||||| ||||||||||| ||| |||  |||| | ||||  ||||| ||||| |    
T  46107523 ggtagatagaagagttggcaaattcatcataaattcacacacataaagtggaggtatcggggttcgaatctcgatcatgacgtctgatctaataattttg 46107424  T
Q  185 acatttttaccagttgatctag 206  Q
    ||||||||| ||||||| ||||    
T  46107423 acatttttatcagttgaactag 46107402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 26186173 - 26186259
Alignment:
Q  122 cacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctagaac 209  Q
    |||||| |||||||| ||| ||||||| || || || |||| | |||| | |||||||||||||||||||||| |||||| |||||||    
T  26186173 cacacacaaagtggaagtaccggggttcgaccc-caatcatgacgtctggcctaacaatttcgacatttttactagttgagctagaac 26186259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 9747352 - 9747384
Alignment:
Q  174 taacaatttcgacatttttaccagttgatctag 206  Q
    ||||||||||||||||||||| |||||||||||    
T  9747352 taacaatttcgacatttttacgagttgatctag 9747384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 50735909 - 50735828
Alignment:
Q  113 gtaaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttac 194  Q
    |||||||  |||||||||| |||| |||||| ||||| |||||| ||||| || ||| ||||||||||||||||| ||||||    
T  50735909 gtaaacttacacacataaaatggaggtatcgcggtttaaacctcggtcatgatatctggtctaacaatttcgacagttttac 50735828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 50776946 - 50777027
Alignment:
Q  113 gtaaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttac 194  Q
    |||||||  |||||||||| |||| |||||| ||||| |||||| ||||| || ||| ||||||||||||||||| ||||||    
T  50776946 gtaaacttacacacataaaatggaggtatcgcggtttaaacctcggtcatgatatctggtctaacaatttcgacagttttac 50777027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 40878216 - 40878258
Alignment:
Q  120 ctcacacataaagtggatgtatcggggtttgaacctcagtcat 162  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||    
T  40878216 ctcacacataaagtggaggtatcggggttcgaacctcaatcat 40878258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 8508061 - 8507985
Alignment:
Q  86 ggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcat 162  Q
    |||||||||| || |||||||| ||||  ||||||| ||||||||| ||||| ||| ||||||||||||| |||||||    
T  8508061 ggtagatagacgaaatggcaaagccattataaactcacacacataa-gtggaggtaccggggtttgaaccccagtcat 8507985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 36540182 - 36540129
Alignment:
Q  138 gtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttt 191  Q
    ||||||||||| ||||||||||||| |  ||| | |||||||||||||||||||    
T  36540182 gtatcggggttcgaacctcagtcatgacatctggcctaacaatttcgacatttt 36540129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 54923613 - 54923500
Alignment:
Q  89 agatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgaca 187  Q
    ||||||| |||||| ||||| |||  |||| || |||||| ||| |||| ||||||| ||| ||||| | ||||| | |||    |||||||||||||||    
T  54923613 agatagacgagatgacaaaatcatcataaattcacacacacaaaatggaagtatcggagttcgaaccccggtcatgacgtccgacctaacaatttcgaca 54923514  T
Q  188 tttttaccagttga 201  Q
    ||||||||||||||    
T  54923513 tttttaccagttga 54923500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 30703219 - 30703100
Alignment:
Q  87 gtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcga 185  Q
    ||||||||| || |||||||| ||||  |||||||||||||| || ||||| ||| ||||||| ||||| | ||||| |  || || |||||||||||||    
T  30703219 gtagatagacgaaatggcaaagccattataaactctcacacacaa-gtggaggtaacggggttcgaaccccggtcatgacatccagcctaacaatttcga 30703121  T
Q  186 catttttaccagttgatctag 206  Q
     |||||| ||| |||| ||||    
T  30703120 tatttttgccaattgagctag 30703100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 33096080 - 33095992
Alignment:
Q  113 gtaaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttga 201  Q
    |||||||| |||||| |||||||| || |||| ||||||||| || |||| | ||   | |||||||||||| ||||||| ||||||||    
T  33096080 gtaaactcacacacacaaagtggaggtgtcggagtttgaaccccaatcatgacgttcggcctaacaatttcgtcatttttgccagttga 33095992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 9297888 - 9297766
Alignment:
Q  85 gggtagatagatgagatggcaaaaccatg-taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttc 183  Q
    ||||||||||| | ||||||||||||||  ||||||| |||||| |||||||| ||| |||| |   |||| || |||| | |||| | |||||||||||    
T  9297888 gggtagatagacgggatggcaaaaccatcataaactcacacacacaaagtggaggtaccgggttcgaaaccccaatcatgacgtctggcctaacaatttc 9297789  T
Q  184 gacatttttaccagttgatctag 206  Q
    |||||||||  ||||||| ||||    
T  9297788 gacatttttgtcagttgaactag 9297766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 2018848 - 2018881
Alignment:
Q  173 ctaacaatttcgacatttttaccagttgatctag 206  Q
    ||||||||||||||||||||||||||||| ||||    
T  2018848 ctaacaatttcgacatttttaccagttgagctag 2018881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 4429969 - 4430061
Alignment:
Q  114 taaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcgacatttttaccagttgatctagaa 208  Q
    ||||||| ||||||||| ||||| ||||||||||||||||| | ||||| |  ||  | ||||||||||||||| ||||||||||||| ||||||    
T  4429969 taaactcacacacataa-gtggaggtatcggggtttgaaccccggtcatgacatccggcctaacaatttcgaca-ttttaccagttgagctagaa 4430061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 30528112 - 30527991
Alignment:
Q  86 ggtagatagatgagatggcaaaaccat-gtaaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| || |||| ||| |||| |||||||| |||||| |||||||| ||  ||||||| ||| |||  |||| |||||  | ||||||||||||    
T  30528112 ggtagatagaagaaatggtaaagccatcgtaaactcacacacacaaagtggaggtgccggggttcgaatctcgatcatgatgtccggcctaacaatttcg 30528013  T
Q  185 acatttttaccagttgatctag 206  Q
     |||||| ||| ||||| ||||    
T  30528012 gcattttcaccggttgagctag 30527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 30568452 - 30568331
Alignment:
Q  86 ggtagatagatgagatggcaaaaccat-gtaaactctcacacataaagtggatgtatcggggtttgaacctcagtcatcatgtctagtctaacaatttcg 184  Q
    |||||||||| || |||| ||| |||| |||||||| |||||| |||||||| ||  ||||||| ||| |||  |||| |||||  | ||||||||||||    
T  30568452 ggtagatagaagaaatggtaaagccatcgtaaactcacacacacaaagtggaggtgccggggttcgaatctcgatcatgatgtccggcctaacaatttcg 30568353  T
Q  185 acatttttaccagttgatctag 206  Q
     |||||| ||| ||||| ||||    
T  30568352 gcattttcaccggttgagctag 30568331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University