View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_28 (Length: 253)
Name: NF1466_low_28
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 41114268 - 41114379
Alignment:
| Q |
129 |
tacgaaacattttcttaaacagaataagcaagttgttagacgaaagcatgtgaaagttttatgttgtatcatgctagagcccttggacttccgatatgga |
228 |
Q |
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| T |
41114268 |
tacgaaacattttcttaaacagaataagcaagttgttagacgaaagcatgtgaaagttttatgttgtatcatgctagagcccttgggcttcagatatgga |
41114367 |
T |
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| Q |
229 |
taaagaacacag |
240 |
Q |
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| T |
41114368 |
taacgaacacag |
41114379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41114141 - 41114208
Alignment:
| Q |
1 |
ttcactcaatttcatttcttgtaaatatttgtatagccaacagtgcaaacaattttgttttcacataa |
68 |
Q |
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| T |
41114141 |
ttcactcaatttcatttcttgtaaatatttgtatagccaacagtgcaaacaattttgttttcacataa |
41114208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41100355 - 41100414
Alignment:
| Q |
1 |
ttcactcaatttcatttcttgtaaatatttgtatagccaacagtgcaaacaattttgttt |
60 |
Q |
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| T |
41100355 |
ttcactcaacttccttttttgaaaatattcgtatagccaacattgtaaacaattttgttt |
41100414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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