View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1466_low_30 (Length: 250)

Name: NF1466_low_30
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1466_low_30
NF1466_low_30
[»] chr4 (6 HSPs)
chr4 (20-239)||(5187249-5187469)
chr4 (49-239)||(48165633-48165820)
chr4 (20-224)||(10734889-10735089)
chr4 (20-224)||(10948658-10948858)
chr4 (147-239)||(26958347-26958439)
chr4 (146-228)||(32283301-32283383)
[»] chr7 (6 HSPs)
chr7 (49-239)||(3812685-3812872)
chr7 (49-239)||(350254-350441)
chr7 (146-239)||(35149508-35149601)
chr7 (138-220)||(8499507-8499589)
chr7 (138-220)||(8486441-8486523)
chr7 (138-220)||(8521250-8521332)
[»] chr1 (3 HSPs)
chr1 (49-239)||(31056502-31056689)
chr1 (20-229)||(25383074-25383279)
chr1 (20-229)||(38145404-38145609)
[»] chr3 (7 HSPs)
chr3 (88-239)||(24644979-24645129)
chr3 (20-229)||(42192759-42192964)
chr3 (20-239)||(49156107-49156322)
chr3 (20-229)||(10762185-10762390)
chr3 (88-224)||(10239749-10239885)
chr3 (20-224)||(38450606-38450805)
chr3 (149-224)||(11841268-11841343)
[»] chr8 (5 HSPs)
chr8 (21-239)||(39728761-39728976)
chr8 (49-229)||(10704264-10704442)
chr8 (20-229)||(5543697-5543906)
chr8 (20-240)||(14414374-14414589)
chr8 (94-239)||(32895511-32895656)
[»] chr2 (4 HSPs)
chr2 (49-228)||(23342040-23342215)
chr2 (20-229)||(13460456-13460661)
chr2 (94-239)||(35086195-35086340)
chr2 (183-229)||(35440911-35440957)
[»] scaffold0208 (2 HSPs)
scaffold0208 (20-229)||(10820-11025)
scaffold0208 (147-239)||(29687-29779)
[»] chr5 (7 HSPs)
chr5 (20-229)||(12687708-12687913)
chr5 (49-229)||(32095741-32095917)
chr5 (20-239)||(28526902-28527117)
chr5 (91-224)||(19061255-19061386)
chr5 (149-224)||(41295825-41295900)
chr5 (23-135)||(26508592-26508700)
chr5 (20-130)||(41295690-41295797)
[»] chr6 (6 HSPs)
chr6 (20-239)||(6101924-6102139)
chr6 (49-239)||(32030991-32031177)
chr6 (20-224)||(8652346-8652546)
chr6 (149-224)||(21192410-21192485)
chr6 (149-224)||(21772118-21772193)
chr6 (133-229)||(17580162-17580258)
[»] scaffold0363 (1 HSPs)
scaffold0363 (20-240)||(4122-4337)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 5187249 - 5187469
Alignment:
Q  20 gggacacctcttttgtttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5187249 gggacacctcttttgtttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaa 5187348  T
Q  120 tgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgccc-attaaaaaatttatgaattcagaaatttatgt 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||    
T  5187349 tgaaatgacataattttttggatgatctcaatcaccgagagagacttttcagtctcaaatattgcccaattaaaaaatttatgaattcataaatttaagt 5187448  T
Q  219 attttcctacattttacctat 239  Q
    |||||||||||||||||||||    
T  5187449 attttcctacattttacctat 5187469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 48165633 - 48165820
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| |||||||||||||  ||| |||    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  48165633 atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaaataaaatgacataattttttggatgacctc 48165729  T
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  48165730 aatcatcgagagagacttttcagtctcaaatattgcccattaagaaatttatgaattcagaaatttaagtattttcctacactttgcctat 48165820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 10735089 - 10734889
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| ||  || |||||||||| |||| |||||||||||||||    
T  10735089 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattc-ga--atatcacaaaagagttatttcaataaagttgaaa 10734994  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    || |||||||||| |||||||||||| | |||||| | |||||||||||||| ||||||| |||||| |||| ||||||||||||||||||||| || ||    
T  10734993 ataaaatgacata-ttttttggatgaccccaatcaccaagagagacttttcactctcaaacattgcctattagaaaatttatgaattcagaaatataagt 10734895  T
Q  219 attttc 224  Q
    ||||||    
T  10734894 attttc 10734889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 10948858 - 10948658
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| ||  || |||||||||| |||| |||||||||||||||    
T  10948858 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattc-ga--atatcacaaaagagttatttcaataaagttgaaa 10948763  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    || |||||||||| |||||||||||| | |||||| | |||||||||||||| ||||||| |||||| |||| ||||||||||||||||||||| || ||    
T  10948762 ataaaatgacata-ttttttggatgaccccaatcaccaagagagacttttcactctcaaacattgcctattagaaaatttatgaattcagaaatataagt 10948664  T
Q  219 attttc 224  Q
    ||||||    
T  10948663 attttc 10948658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 26958439 - 26958347
Alignment:
Q  147 tcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    ||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||| ||| ||||||||| ||| |||||    
T  26958439 tcaatcaccgagagagacttttcagtctcgaatattgcccattagaaaatttatgaattcataaatttaagtaatttcctacactttgcctat 26958347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 32283301 - 32283383
Alignment:
Q  146 ctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctac 228  Q
    |||||||||| ||||||||| || | |||||||||||| |||||| || |||||| |||||| ||| ||| ||||||||||||    
T  32283301 ctcaatcatcaagagagactatttagtctcaaatattgtccattagaacatttataaattcataaaattaagtattttcctac 32283383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 3812872 - 3812685
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| |||||||||||||  ||| |||    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3812872 atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaaataaaatgacataattttttggatgatctc 3812776  T
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  3812775 aatcatcgagagagacttttcagtctcaaatattgcccattaggaaatttatgtattcagaaatttaagtattttcctacactttgcctat 3812685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 350254 - 350441
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| |||||||||||||  ||| |||    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  350254 atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaaataaaatgacataattttttggatgacctc 350350  T
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    ||||||| |||||||||||||| ||||||||||||||||| |  ||||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  350351 aatcatcaagagagacttttcagtctcaaatattgcccataaggaaatttatgtattcagaaatttaagtattttcctacactttgcctat 350441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 35149601 - 35149508
Alignment:
Q  146 ctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    |||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  35149601 ctcaatcaccgagagagacttttcaatctcaaatagtgcccattagaaaatttatgaattcagaaatttaagtattttcctacactttgcctat 35149508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 8499507 - 8499589
Alignment:
Q  138 tggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtat 220  Q
    |||||||  ||||||| |||||  ||||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  8499507 tggatgacgtcaatcaccgagaaggacttttaagtctcaaatattgcccattagaaaatttatgaattcagaaatttaagtat 8499589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 8486441 - 8486523
Alignment:
Q  138 tggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtat 220  Q
    |||||||  ||||||| |||||  ||||||| | ||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  8486441 tggatgacgtcaatcaccgagaaggacttttaagtctaaaatattgcccattagaaaatttatgaattcagaaatttaagtat 8486523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 8521250 - 8521332
Alignment:
Q  138 tggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtat 220  Q
    |||||||  ||||||| ||||| | |||||| | |||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  8521250 tggatgacgtcaatcaccgagaaaaacttttaagtctcaaatattgcccattaggaaatttatgaattcagaaatttaagtat 8521332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 31056502 - 31056689
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| |||||||||||||  ||| |||    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31056502 atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaaataaaatgacataattttttggatgatctc 31056598  T
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  31056599 aatcatcgagagagacttttcagtctcaaatattgcccattaggaaatttatgtattcagaaatttaagtattttcctacactttgcctat 31056689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 25383279 - 25383074
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||||||    
T  25383279 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaa 25383184  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    |||||||||| |||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||    
T  25383183 atgaaatgacgtaattttt-ggatgacctcaatcaccgagagagacttttcagtctcaaatattgcccattagaaaatttatgaattcataaatttaagt 25383085  T
Q  219 attttcctaca 229  Q
    |||||||||||    
T  25383084 attttcctaca 25383074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 38145609 - 38145404
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||| ||  ||| |||    |||||||||| ||||||||||||||||||||    
T  38145609 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaagggattattcggata---tcacaaaagagttatatcaataaagttgaaa 38145514  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    ||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||    
T  38145513 atgaaatgacataattttt-ggacgatctgaatcaccgagagagacttttcagtctcaaatattgcccattaagaaatttatgaattcataaatttaagt 38145415  T
Q  219 attttcctaca 229  Q
    |||||| ||||    
T  38145414 attttcataca 38145404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 24645129 - 24644979
Alignment:
Q  88 tcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgccca 187  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24645129 tcacaaaagagttatatcaataaagttgaaaatgaaatgacataattttt-ggatgatctcaatcatcgagagagacttttcagtctcaaatattgccca 24645031  T
Q  188 ttaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    ||| |||||||||||||||| ||||||| ||||||||||||| ||| |||||    
T  24645030 ttagaaaatttatgaattcataaatttaagtattttcctacactttgcctat 24644979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 42192964 - 42192759
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||||||    
T  42192964 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaa 42192869  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    |||||||||| |||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||    
T  42192868 atgaaatgacgtaattttt-ggatgacctcaatcaccgagagagacttttcagtctcaaatattgcccattagaaaatttatgaattcataaatttaagt 42192770  T
Q  219 attttcctaca 229  Q
    |||||||||||    
T  42192769 attttcctaca 42192759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 49156107 - 49156322
Alignment:
Q  20 gggacacctcttttgtttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaa 119  Q
    |||||||||||||||| | ||   |||  |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||| |||    
T  49156107 gggacacctcttttgtattagacatttcaatacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgtaaa 49156203  T
Q  120 tgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgta 219  Q
    ||||||||||||||||| ||||||| ||||| || ||||| ||||||| || |||| |||||||||||||| |||||||||||||||||||||||| |||    
T  49156204 tgaaatgacataatttt-tggatgacctcaaccaccgagaaagactttccagtctcgaatattgcccattagaaaatttatgaattcagaaatttaagta 49156302  T
Q  220 ttttcctacattttacctat 239  Q
    |||||||||| ||| |||||    
T  49156303 ttttcctacactttgcctat 49156322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 10762390 - 10762185
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||| ||    
T  10762390 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgtaa 10762295  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||| || |||||||||| ||||||||  ||||||||||||||| ||||||| ||    
T  10762294 atgaaatgacataattttt-ggatgacctcaatcaccgagagagactttgcagtctcaaatatagcccattaggaaatttatgaattcataaatttaagt 10762196  T
Q  219 attttcctaca 229  Q
    |||||||||||    
T  10762195 attttcctaca 10762185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 10239885 - 10239749
Alignment:
Q  88 tcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgccca 187  Q
    |||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||| | |||||| | |||||||||||||| |||||||||||||| |    
T  10239885 tcacaaaagagttatttcaataaagttgaaaataaaatgacatatttttttggatgaccccaatcaccaagagagacttttcagtctcaaatattgccta 10239786  T
Q  188 ttaaaaaatttatgaattcagaaatttatgtattttc 224  Q
    ||| |||||||||||||||| |||| || ||||||||    
T  10239785 ttagaaaatttatgaattcaaaaatataagtattttc 10239749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 38450805 - 38450606
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| ||  || |||||||||| |||| |||||||||||||||    
T  38450805 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattc-ga--atatcacaaaagagttatttcaataaagttgaaa 38450710  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    || |||||||||| |||||||||||| | |||||| | | |||||||||||| |||||||||||||| |||| ||||||||||||||||||||| || ||    
T  38450709 ataaaatgacata-ttttttggatgaccccaatcaccaa-agagacttttcagtctcaaatattgcctattagaaaatttatgaattcagaaatataagt 38450612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 11841343 - 11841268
Alignment:
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttc 224  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  11841343 aatcaccgagagagacttttcagtctcaaatattgcccattagaaaatttatgaattcagaaatataagtattttc 11841268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 39728976 - 39728761
Alignment:
Q  21 ggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaa 119  Q
    ||||||||||||||| ||| ||||||   |||||||||||| ||| |||||||||  ||||||     |||||||||| ||||| |||||||||||||||    
T  39728976 ggacacctcttttgtattatgcatttca-atacttagagattcttatcaaggtattattcagaca---tcacaaaagagttataccaataaagttgaaaa 39728881  T
Q  120 tgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgta 219  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||    
T  39728880 tgaaatgacataattttttggatgacctcaatcatcgacagagactttgcagtctcaaatattgcccattagaaaatttatgaattcagaaatttaagta 39728781  T
Q  220 ttttcctacattttacctat 239  Q
    ||||||||| |||| |||||    
T  39728780 ttttcctacgttttgcctat 39728761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 10704264 - 10704442
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| |||||||||||||  ||| |||    |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  10704264 atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaaataaaatgacataattttt-ggatgacctc 10704359  T
Q  149 aatcatcgaga--gagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctaca 229  Q
    |||||||||||  ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  10704360 aatcatcgagagagagacttttcagtctcaaatattgcccattaggaaatttatgaattcagaaatttaagtattttcctaca 10704442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 5543906 - 5543697
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaaga---at-tatatcaataaagtt 114  Q
    |||||||||||||||| ||| |||||||  |||||||||||| |||||||||||||  ||| |||    ||||||||||   || |||||||||||||||    
T  5543906 gggacacctcttttgtattaggcatttta-atacttagagattcttctcaaggtattattcggata---tcacaaaagagctatatatatcaataaagtt 5543811  T
Q  115 gaaaatgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaattt 214  Q
    |||||||||||||| |||||||| |||||| |||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  5543810 gaaaatgaaatgacgtaattttt-ggatgacctcaatcaccaagagagacttttcagtctcaaatattgcccattagaaaatttatgaattcataaattt 5543712  T
Q  215 atgtattttcctaca 229  Q
    | |||||||||||||    
T  5543711 aagtattttcctaca 5543697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 14414374 - 14414589
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||||||     |||||||||| |||||||||||||||| |||    
T  14414374 gggacacctcttttgtattatgcattta--atacttagagattcttctcaaggtattattcagaca---tcacaaaagagttatatcaataaagttcaaa 14414468  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    || |||||||| |||||| ||||||| ||||||||||||| ||||||||  | |||||||||||| |||||| |||||| ||||||||||| ||||| ||    
T  14414469 ataaaatgacacaatttt-tggatgacctcaatcatcgagtgagactttctagtctcaaatattgtccattagaaaattaatgaattcagatatttaagt 14414567  T
Q  219 attttcctacattttacctatg 240  Q
    ||||||||||| ||| ||||||    
T  14414568 attttcctacacttttcctatg 14414589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 32895511 - 32895656
Alignment:
Q  94 aagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaa 193  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |    
T  32895511 aagagttatatcaataaagttgaaaataaaatgacataatttt-tggatgacctcaatcatcgagagagacttttcagtctcaaatattgcccattagga 32895609  T
Q  194 aatttatgaattcagaaattt-atgtattttcctacattttacctat 239  Q
    |||||||| ||||| |||||| | ||||||||||||| ||| |||||    
T  32895610 aatttatgtattcataaatttaaagtattttcctacactttgcctat 32895656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 23342040 - 23342215
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| ||||| |||||||  |||||||    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  23342040 atacttagagattcttctaaaggtattattcagata---tcacaaaagagttatatcaataaagttgaaaatgaaatgacataatttt-tggatgacctc 23342135  T
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctac 228  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  23342136 aatcatcgagagagacttttcactcttaaatattgcccattagaaaatttatgaattcggaaatttatgtattttcctac 23342215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 13460456 - 13460661
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||||||    
T  13460456 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaa 13460551  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    |||||||||| ||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||    
T  13460552 atgaaatgacgtaatttt-tggatgacctcaatcaccgagagagacttttcagtctcaaatattgcccattagaaaatttatgaattcataaatttaagt 13460650  T
Q  219 attttcctaca 229  Q
    |||||||||||    
T  13460651 attttcctaca 13460661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 35086340 - 35086195
Alignment:
Q  94 aagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaa 193  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||  |    
T  35086340 aagagttatatcaataaagttgaaaataaaatgacataattttt-ggatgacctcaatcatcgagagagacttttcagtctcaaatattgcccattagga 35086242  T
Q  194 aatttatgaattcagaaattt-atgtattttcctacattttacctat 239  Q
    |||||||| ||||| |||||| | ||||||||||||| ||| |||||    
T  35086241 aatttatgtattcataaatttaaagtattttcctacactttgcctat 35086195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 35440957 - 35440911
Alignment:
Q  183 gcccattaaaaaatttatgaattcagaaatttatgtattttcctaca 229  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||    
T  35440957 gcccattagaaaatttatgaattcagaaacttaagtattttcctaca 35440911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 10820 - 11025
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||||||    
T  10820 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaa 10915  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||    
T  10916 atgaaatgacataatttt-tggatgacctcaatcaccgagagagacttttcagtctcaaatattgcccattagaaaatttatgaattcataaatttaagt 11014  T
Q  219 attttcctaca 229  Q
    |||||||||||    
T  11015 attttcctaca 11025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 29687 - 29779
Alignment:
Q  147 tcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    ||||||| |||||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| |||||    
T  29687 tcaatcaccgagagagacttttcagtctcgaatattgtccattagaaaatttatgaattcagaaatttatgtaatttcctacattttgcctat 29779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 12687913 - 12687708
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||||||    
T  12687913 gggacacctcttttgtattaggcatttca-atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaa 12687818  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||    
T  12687817 atgaaatgacataattttt-ggatgacctcaatcaccgagagagacttttcagtctcaaatattgcccattagaaaatttatgaattcataaatttaagt 12687719  T
Q  219 attttcctaca 229  Q
    |||||||||||    
T  12687718 attttcctaca 12687708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 32095917 - 32095741
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |||    
T  32095917 atacttagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaaatgaaattacataattttt-ggatgacctc 32095822  T
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctaca 229  Q
    ||||| |||||||||||||||| ||||||||||||||| ||| ||||||||| |||||| ||||||| |||||||||||||    
T  32095821 aatcaccgagagagacttttcagtctcaaatattgcccgttagaaaatttataaattcataaatttaagtattttcctaca 32095741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 28527117 - 28526902
Alignment:
Q  20 gggacacctcttttgtttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaa 119  Q
    |||||||||||||||| | ||   |||  |||||||||||| |||||||||||||  ||| |||    |||||||||| |||||| |||||||||| |||    
T  28527117 gggacacctcttttgtattagacatttcaatacttagagattcttctcaaggtattattcggata---tcacaaaagagttatattaataaagttgtaaa 28527021  T
Q  120 tgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgta 219  Q
    |||||||||||||||||| |||||| ||||| || ||||| ||||||| || |||| |||||||||||||| |||||||||||||||||||||||| |||    
T  28527020 tgaaatgacataattttt-ggatgacctcaaccaccgagaaagactttccagtctcgaatattgcccattagaaaatttatgaattcagaaatttaagta 28526922  T
Q  220 ttttcctacattttacctat 239  Q
    |||||||||| ||| |||||    
T  28526921 ttttcctacactttgcctat 28526902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 19061386 - 19061255
Alignment:
Q  91 caaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccatta 190  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||||||||| ||||||    
T  19061386 caaaagacttatatcaataaagttgaaaatgaaatgacataattttttggatgacctcaatcatcgagagagac--ttcagtctcaaatattgtccatta 19061289  T
Q  191 aaaaatttatgaattcagaaatttatgtattttc 224  Q
      ||||||||||||||||||| ||| ||||||||    
T  19061288 ggaaatttatgaattcagaaaattaagtattttc 19061255  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 41295825 - 41295900
Alignment:
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttc 224  Q
    ||||| |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  41295825 aatcaccgagagagacttttcagtctcaaatattgcccattaggaaatttatgaattcagaaatttaagtattttc 41295900  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 26508592 - 26508700
Alignment:
Q  23 acacctcttttgtttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatga 122  Q
    ||||||||||||| | ||  |||| ||||||||||||| | |||||||||||| ||||    || |||||||||| |||||| |||||||||| ||||||    
T  26508592 acacctcttttgtattaggcttttcgatacttagagattcctctcaaggtatcattca---aatatcacaaaagagttatattaataaagttg-aaatga 26508687  T
Q  123 aatgacataattt 135  Q
    |||||||||||||    
T  26508688 aatgacataattt 26508700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 41295690 - 41295797
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| |||||||   ||| ||||||| |||||||||||||  ||| |||    |||||||||| ||||||||||||||||||||    
T  41295690 gggacacctcttttgtattaggcattttat-tacgtagagattcttctcaaggtattattcggata---tcacaaaagagttatatcaataaagttgaaa 41295785  T
Q  119 atgaaatgacat 130  Q
    || || ||||||    
T  41295786 ataaattgacat 41295797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 6101924 - 6102139
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| ||||||| |||||  ||| |||    |||||||||| ||||||||||||||||||||    
T  6101924 gggacacctcttttgtattaggcatttca-atacttagagattcttctcacggtattattcggata---tcacaaaagagttatatcaataaagttgaaa 6102019  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||| ||    
T  6102020 atgaaatgacataatttt-tggatgacctcaatcaccgagagagacttttcaatctcaaatattgtccataagaaaattcatgaattcagaaatttaagt 6102118  T
Q  219 attttcctacattttacctat 239  Q
    ||||||||||| ||| |||||    
T  6102119 attttcctacactttgcctat 6102139  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 32031177 - 32030991
Alignment:
Q  49 atacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaaatgaaatgacataattttttggatgatctc 148  Q
    |||||||||||| |||||||||||||  ||||||     |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  32031177 atacttagagattcttctcaaggtattattcagaca---tcacaaaagagttatatcaataaagttgaaaataaaatgacataattttt-ggatgacctc 32031082  T
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctacattttacctat 239  Q
    ||||| |||||||||||||||| ||| ||||||| |||||||  ||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  32031081 aatcaccgagagagacttttcagtcttaaatatttcccattaggaaatttatgaattcagaaatttaagtattttcctacactttgcctat 32030991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 8652546 - 8652346
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   ||||||||||||  ||||||||||||  ||| ||  || |||||||||| |||| |||||||||||||||    
T  8652546 gggacacctcttttgtattaggcatttca-atacttagagatttttctcaaggtattattc-ga--atatcacaaaagagttatttcaataaagttgaaa 8652451  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    || |||||||||| |||||||||||| | |||||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||    
T  8652450 ataaaatgacata-ttttttggatgaccccaatcaccaagagagacttttcaatctcaaatattgcctattagaaaatttatgaattcagaaatataagt 8652352  T
Q  219 attttc 224  Q
    ||||||    
T  8652351 attttc 8652346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 21192485 - 21192410
Alignment:
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttc 224  Q
    ||||| |||||||||||||||| |||||||||||| |||||| |||||||||||||||| |||| || ||||||||    
T  21192485 aatcaccgagagagacttttcagtctcaaatattgtccattagaaaatttatgaattcaaaaatataagtattttc 21192410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 21772193 - 21772118
Alignment:
Q  149 aatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttc 224  Q
    ||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||| || ||||||||    
T  21772193 aatcaccgagagagactttttagtctcaaatattgcccattagaaaatttatgaattcataaatataagtattttc 21772118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 17580162 - 17580258
Alignment:
Q  133 ttttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgtattttcctaca 229  Q
    |||||| ||||| ||||||||  ||||||||||||||| ||||||| ||| |||||||  ||||||| ||||| | |||| ||  ||||||||||||    
T  17580162 ttttttagatgacctcaatcactgagagagacttttcagtctcaaaaatttcccattagcaaatttaggaattgaaaaatctaaatattttcctaca 17580258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 4337 - 4122
Alignment:
Q  20 gggacacctcttttgt-ttaagcatttttgatacttagagatacttctcaaggtatccttcagatgatgtcacaaaagaattatatcaataaagttgaaa 118  Q
    |||||||||||||||| ||| ||||||   |||||||||||| |||||||||||||  ||||||     |||||||||| |||||||||||||||| |||    
T  4337 gggacacctcttttgtattatgcattta--atacttagagattcttctcaaggtattattcagaca---tcacaaaagagttatatcaataaagttcaaa 4243  T
Q  119 atgaaatgacataattttttggatgatctcaatcatcgagagagacttttcaatctcaaatattgcccattaaaaaatttatgaattcagaaatttatgt 218  Q
    || |||||||| ||||||| |||||| ||||||||||||| ||||||||  | |||||||||||| |||||| |||||| ||||||||||| ||||| ||    
T  4242 ataaaatgacacaattttt-ggatgacctcaatcatcgagtgagactttctagtctcaaatattgtccattagaaaattaatgaattcagatatttaagt 4144  T
Q  219 attttcctacattttacctatg 240  Q
    ||||||||||| ||| ||||||    
T  4143 attttcctacacttttcctatg 4122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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