View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_31 (Length: 249)
Name: NF1466_low_31
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 11856274 - 11856472
Alignment:
| Q |
1 |
aaaaacagtaacctaaagaagtgatagaaa--gagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatcgttaacttgcgg |
98 |
Q |
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| T |
11856274 |
aaaaacagtaacctaaagaagtgatagaaattgagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatcgttgacttgcgg |
11856373 |
T |
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| Q |
99 |
tccaacctctacaacctctcctgctacatcagtgcctgcatcaaagtcccaagagcaaaataatatttattaaatcctaagagtaagcgtggaatgagt |
197 |
Q |
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| T |
11856374 |
tccaacctctacaacctctcctgatacatcagtgcctgaatcaaagtcccaagagcaaaagaatctatgttatatcctaagagtaagcatggaatgagt |
11856472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 11841885 - 11842040
Alignment:
| Q |
2 |
aaaacagtaacctaaagaagtgatagaaagagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatcgttaacttgcggtcc |
101 |
Q |
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| T |
11841885 |
aaaacagaaacctaaggaagtgaaagaaagagataagtacttgatgtgtgagtttagcaataactttgtcgccagatttgaaatccttgacttgtggtcc |
11841984 |
T |
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| Q |
102 |
aacctctacaacctctcctgctacatcagtgcctgcatcaaagtcccaagagcaaa |
157 |
Q |
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| T |
11841985 |
aacctctaccacctctccagctacatcagtgcctgaatcaaagtcccaagagcaaa |
11842040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 11802018 - 11802146
Alignment:
| Q |
30 |
agagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatcgttaacttgcggtccaacctctacaacctctcctgctacatca |
129 |
Q |
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| T |
11802018 |
agagataggtactagattgttgagtttagcaataactttatctccaactttaaaatccttgacttgttctccaatctctacaacctctcctgctacatca |
11802117 |
T |
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| Q |
130 |
gtgcctgcatcaaagtcccaagagcaaaa |
158 |
Q |
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| T |
11802118 |
gtgcctgaatcaaattcccaagagcaaaa |
11802146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 11431170 - 11431301
Alignment:
| Q |
15 |
aaagaagtgatagaaagagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatcgttaacttgcggtccaacctctacaacc |
114 |
Q |
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| T |
11431170 |
aaagaagtaaaagaaagagatacttacttgattgttgagtttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacc |
11431269 |
T |
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| Q |
115 |
tctcctgctacatcagtgcctgcatcaaagtc |
146 |
Q |
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| T |
11431270 |
tctcctgctacatcggtgcctgaatcaaagtc |
11431301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 11564296 - 11564165
Alignment:
| Q |
15 |
aaagaagtgatagaaagagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatcgttaacttgcggtccaacctctacaacc |
114 |
Q |
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| T |
11564296 |
aaagaagtaaaagaaagagatacttacttgattgttgagtttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacc |
11564197 |
T |
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| Q |
115 |
tctcctgctacatcagtgcctgcatcaaagtc |
146 |
Q |
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| T |
11564196 |
tctcctgctacatcggtgcctgaatcaaagtc |
11564165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 11808055 - 11808106
Alignment:
| Q |
91 |
acttgcggtccaacctctacaacctctcctgctacatcagtgcctgcatcaa |
142 |
Q |
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| T |
11808055 |
acttgtggtccaacttctactacctctcctgctacatcagtgcctgaatcaa |
11808106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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