View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_34 (Length: 245)
Name: NF1466_low_34
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 37671937 - 37671700
Alignment:
| Q |
8 |
cagatgataaacgatttctgcagagatatttaaaatgtcggggcgtaagttcaaactcgcaatattaagaatatactaactgattttggttgtgattttc |
107 |
Q |
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| T |
37671937 |
cagatgataaacaattgctgcagagatatttaaaatgtcggggcgtaagttcaaactcgcaatattaagaatatactaactgattttggttgtgattttc |
37671838 |
T |
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| Q |
108 |
ttttggatgatgatctggttgaggaagaagcagaatctgatagaagatactcttgcattatccaattggtttgattaccattaggtgcttctccaatatg |
207 |
Q |
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| T |
37671837 |
ttttggatgatgatctggttgaggaagaagcagaatctgatagacgatactcttgcattatccaattggtttgattaccattaggtgcttctccaatatg |
37671738 |
T |
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| Q |
208 |
gaacacataatatttcttcataccaactctcttattgc |
245 |
Q |
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| T |
37671737 |
gaacacataatatttcttcataccaactctcttattgc |
37671700 |
T |
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