View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_35 (Length: 244)
Name: NF1466_low_35
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 7141350 - 7141543
Alignment:
| Q |
41 |
tgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgataaaaaatccaagagtgagggagaagccacaagatgaattaaga |
140 |
Q |
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| T |
7141350 |
tgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgagggagaaggcacaagctgaattaaga |
7141449 |
T |
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| Q |
141 |
caaacattcaaagacaaggaactaatatatgaaactgatctagaaaaact----------aagttagtgatcaaagaaacattgaggttacacc |
224 |
Q |
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| T |
7141450 |
caagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacc |
7141543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 7154120 - 7154313
Alignment:
| Q |
41 |
tgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgataaaaaatccaagagtgagggagaagccacaagatgaattaaga |
140 |
Q |
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| T |
7154120 |
tgttgccggaactgatacaacatcgacaacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaaga |
7154219 |
T |
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| Q |
141 |
caaacattcaaagacaaggaactaatatatgaaactgatctagaaaaac----------taagttagtgatcaaagaaacattgaggttacacc |
224 |
Q |
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| T |
7154220 |
gaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacc |
7154313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 7139176 - 7139214
Alignment:
| Q |
6 |
tattgttaaaaaactgaaaaataaatttcttcaaatgttg |
45 |
Q |
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| T |
7139176 |
tattgttaaaaaactgaaaa-taaatttcttcaaatgttg |
7139214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 12425604 - 12425532
Alignment:
| Q |
68 |
aacaatagaatgggctatgtcagaaatgataaaaaatccaagagtgagggagaagccacaagatgaattaaga |
140 |
Q |
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| T |
12425604 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataaga |
12425532 |
T |
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