View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_38 (Length: 239)
Name: NF1466_low_38
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2277001 - 2276779
Alignment:
| Q |
1 |
ggtacagataaaacttaaagaccaacttttaataattaaataatttaaaggagccctggtttaatttagcatgattattttacaatatacattaatgtct |
100 |
Q |
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| T |
2277001 |
ggtacagataaaacttaaagaccaacttttaataattaaataatttaaaggagccctggtttaatttagcatgattattttacaatatacattaatgtct |
2276902 |
T |
|
| Q |
101 |
tcaaaacaatttactacttcatatggaaatgaatgacccatagtctcccacgaatataattatgtattaactattagagcgtgatgttggttagatcatc |
200 |
Q |
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| T |
2276901 |
tcaaaacaatttactatttcatacagaaatgaatgacccatagtctcccacgaatataattatgtattaactattagaccgtgatgttggttagatcatc |
2276802 |
T |
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| Q |
201 |
ataagttcttcttagatattagt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2276801 |
ataagttcttcttagatattagt |
2276779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 55369039 - 55369071
Alignment:
| Q |
17 |
aaagaccaacttttaataattaaataatttaaa |
49 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
55369039 |
aaagaccaactttttataattaaataatttaaa |
55369071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 2378168 - 2378112
Alignment:
| Q |
10 |
aaaacttaaagaccaacttttaataattaaataatttaaaggagccctggtttaatt |
66 |
Q |
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|||||||||||||||| || | |||||||||||| |||||||| | ||||| ||||| |
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| T |
2378168 |
aaaacttaaagaccaatttgttataattaaataacttaaaggatctctggtgtaatt |
2378112 |
T |
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