View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1466_low_4 (Length: 507)
Name: NF1466_low_4
Description: NF1466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1466_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 42960835 - 42961309
Alignment:
| Q |
19 |
aatgaatgctatcattggtctgtccaaatccacagctagcttcaatatacacacccttattggtaataccaactgtttctatcaatgattgtttaactga |
118 |
Q |
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| T |
42960835 |
aatgaatgctatcattggtctgtccaaatccacagctagcttcaatatacacacccttattggtaataccaactgtttctatcaatgattgtttaactga |
42960934 |
T |
|
| Q |
119 |
tttcttaagaggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagt |
218 |
Q |
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| T |
42960935 |
tttcttaagaggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagt |
42961034 |
T |
|
| Q |
219 |
tctgcttttgggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattg |
318 |
Q |
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| T |
42961035 |
tctgcttttgggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattg |
42961134 |
T |
|
| Q |
319 |
ccttatgctgtttcccattttcatccttgaaaatcacccccattgcttttggtctttttcctgcaccaatatttagcattactcattttcagtcatcatg |
418 |
Q |
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| T |
42961135 |
ccttatgctgtttcccattttcatccttgaaaatcacccccattgcttttggtctttttcctgcaccaatatttagcattactcattttcagtcatcatg |
42961234 |
T |
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| Q |
419 |
tgattgtaaaccatttttaaatgtatgaactgcttaattttcaactaagtacaatttataaggcggttttgtaga |
493 |
Q |
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| T |
42961235 |
tgattgtaaaccatttttaaatgtatgaactgcttaattttcaactaagtacaatttataaggcggttttgtaga |
42961309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 128 - 383
Target Start/End: Complemental strand, 5503759 - 5503504
Alignment:
| Q |
128 |
aggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgctttt |
227 |
Q |
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||||||||||| ||||||||| |||||||| ||| |||||||||||||| |||| ||| ||||| | ||| |||||||||| |||||| |||| |
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| T |
5503759 |
aggaacaaaaactgtgttcataggattatctatcattcccttcccaacaaaaggattgttaaggaccactgagatgttcaagttctgaagttcatcttta |
5503660 |
T |
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| Q |
228 |
gggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgct |
327 |
Q |
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|| ||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||||||||| | | |||||||||| | |||||| ||| | |
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| T |
5503659 |
ggaccaattccacttagcaatagcatttgaggagacccaattgccccactagacaatatcacttcactttgcatatcatttcccaaccttgcctcatgtt |
5503560 |
T |
|
| Q |
328 |
gtttcccattttcatccttgaaaatcacccccattgcttttggtctttttcctgca |
383 |
Q |
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| T |
5503559 |
gtttcccattttcatcattgaaaataacccctattgcttttggtctcttacctgca |
5503504 |
T |
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