View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14670_high_1 (Length: 337)
Name: NF14670_high_1
Description: NF14670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14670_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 48893 - 49215
Alignment:
| Q |
1 |
ataatacggatgcatcctccacctcaatcacaatctcaccagctagcagtggaatcacaaatgaattggatgaacaagaaaatgaagacagcagtaactc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48893 |
ataatacggatgcatcctccacctcaatcacaatctcaccagctagcagtggaatcacaaatgaattggatgaacaagaaaatgaagacagcagtaagtc |
48992 |
T |
|
| Q |
101 |
actcccatcctcttttggaaatgcttaatacaccccctccccttccttttttgtgttaattgtctttattattaggtctgtctatttctatgtctatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993 |
actcccatcctcttttggaaatgcttaatacaccccctccccttccttttttgtgttaattgtctttattattaggtctgtctatttctatgtctatgtt |
49092 |
T |
|
| Q |
201 |
tatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgag--ctctctcaattgaagagtatgtatct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49093 |
tatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctctcaattgaagagtatgtatct |
49192 |
T |
|
| Q |
299 |
tagtattattttcggttaatttc |
321 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
49193 |
tagtattattttcggttaatttc |
49215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 25851784 - 25851708
Alignment:
| Q |
53 |
aatcacaaatgaattggatgaacaagaaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaat |
129 |
Q |
| |
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| T |
25851784 |
aatcacaaatgaatgggatgaacatgaaaatgaagacatcagtaactcactcccttcctcttttggaaatgcttaat |
25851708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 25851581 - 25851651
Alignment:
| Q |
53 |
aatcacaaatgaattggatgaacaagaaaatgaagacagcagtaactcactcccatcctcttttggaaatg |
123 |
Q |
| |
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||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25851581 |
aatcacagatgaattggatgaacatgaaaacgaagacagcagtaactcactcccatcctcttttggaaatg |
25851651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 25514998 - 25514879
Alignment:
| Q |
189 |
tatgtctatgtttatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagct---ctctcaattga |
285 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||| |
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| T |
25514998 |
tatgtctatgtctatgtctatgtaagtagtaattatctcaaatgtcccaagatgaggtcggcattaagagtagtctagtctaatccgagctctcaattga |
25514899 |
T |
|
| Q |
286 |
agagtatgtatcttagtatt |
305 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
25514898 |
agagtatgtatcttagtatt |
25514879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 305
Target Start/End: Original strand, 25520378 - 25520495
Alignment:
| Q |
191 |
tgtctatgtttatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagag-----tagtctaatctgagctctctcaattga |
285 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
25520378 |
tgtctatgtctatttctatgtaagtagtaattatctcaaatgtcctaaaatgaggtcggcattaagagtaatctagtctaatctgag--ctctcaattga |
25520475 |
T |
|
| Q |
286 |
agagtatgtatcttagtatt |
305 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
25520476 |
agggtatgtatcttagtatt |
25520495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 42802558 - 42802647
Alignment:
| Q |
208 |
atgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctcaattgaagagtatgtatctt |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
42802558 |
atgtaagtagtaattatctcaaatgtcccaaaatgaggttggcattaagagtagtctaatcagag--ctctcaattgaagaatatgtatctt |
42802647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 42802459 - 42802522
Alignment:
| Q |
80 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatacaccccctcccct |
143 |
Q |
| |
|
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| T |
42802459 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccct |
42802522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 25515067 - 25515021
Alignment:
| Q |
106 |
catcctcttttggaaatgcttaatacaccccctccccttcctttttt |
152 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| ||||||||||||||| |
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|
| T |
25515067 |
catcctctcttggaaatgtttaatgcaccccatccccttcctttttt |
25515021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 25520303 - 25520351
Alignment:
| Q |
102 |
ctcccatcctcttttggaaatgcttaatacaccccctccccttcctttt |
150 |
Q |
| |
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|||||||||||| ||||||||| ||||| |||||| |||||||| |||| |
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| T |
25520303 |
ctcccatcctctcttggaaatgtttaatccaccccatccccttcgtttt |
25520351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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