View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14670_high_2 (Length: 283)
Name: NF14670_high_2
Description: NF14670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14670_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 34873623 - 34873885
Alignment:
| Q |
4 |
catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagcaaccatcgcaacaaat |
103 |
Q |
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| T |
34873623 |
catttatatatcagttgaggaaagaaacatcatagattgcaagacttaactggtgttttcattttgcaggaaatgatgaaaagcaaccatcgcaacaaac |
34873722 |
T |
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| Q |
104 |
tcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggattgtgcagtggtcctt |
203 |
Q |
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| T |
34873723 |
tcttgagatgccttaagggtgcttgcaggttctggtgaagtgaaggaaatggacttaacggtaacggttgatgagaaaagaggattgtgcagtggtcctt |
34873822 |
T |
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| Q |
204 |
catgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagcttgt |
266 |
Q |
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| T |
34873823 |
catgggttgtttggtattcgggaagagggtatgagtttttttgacatagttcttgaagcttgt |
34873885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 34872001 - 34871741
Alignment:
| Q |
4 |
catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagcaaccatcgcaacaaat |
103 |
Q |
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| T |
34872001 |
catttataaatcagttgaggaaagaaacatcatggattgcaagacttaactgttgttttcattttgcaggaaatgatgaaaagcaaccatcgcagcaaac |
34871902 |
T |
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| Q |
104 |
tcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggattgtgcagtggtcctt |
203 |
Q |
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| T |
34871901 |
tcttgagatgccttaagggtgcttgctggttttggtgaagtgaaggaaatagacttaacggtaacggttgatgaaaaaagaggattgtgcagtggtcctt |
34871802 |
T |
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| Q |
204 |
catgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagctt |
264 |
Q |
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| T |
34871801 |
catgggttgtttggtatttgggaagtgggtaagagtttttttgacatagttcttgaagctt |
34871741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 9911247 - 9911056
Alignment:
| Q |
74 |
aaatgatgaaaagcaaccatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttg |
173 |
Q |
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| T |
9911247 |
aaatgatgaaaagcaaccatggcagcagaatcttgagacagcttaatggtgcgtgctggttcaggagaagagaaggaaatggagttaacagtaacggttg |
9911148 |
T |
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| Q |
174 |
atgagaaaagaggattgtgcagtggtccttcatgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagcttg |
265 |
Q |
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| T |
9911147 |
ttgagaaacgagaattgtgtggtggtccttcacgggttgtttggtattcgggaagagggtatgaatttttttgacatagttcttgaagcttg |
9911056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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