View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14670_high_4 (Length: 245)
Name: NF14670_high_4
Description: NF14670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14670_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 2749400 - 2749190
Alignment:
| Q |
16 |
caacacagaaactttacagcaggaaacctagtctgtaaaattatcacgaaccttaatattatcataaaactctctaaaaactttaattcgaatatgatat |
115 |
Q |
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| T |
2749400 |
caacacagaaactttacagcaggaaacctagtctgtaaaattatcacgaaccttaatattatcataaaactctctaaaaactttaattcgaatatgatat |
2749301 |
T |
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| Q |
116 |
atcgacatttttaagtttaaaaaatctgaaagaggaattaaaaatgaatgattttaaaataggaggacaaattttgtgactaaatgaaaatagaaggaat |
215 |
Q |
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| T |
2749300 |
atcgaaatttttaagttta-aaaatctgaaagaggaattaaaaatgaatgattttaaaataggaggacaaattttgtgactaaatgaaaatagaaggaat |
2749202 |
T |
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| Q |
216 |
gaccaaaactgt |
227 |
Q |
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| T |
2749201 |
gatcaaaactgt |
2749190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 2733644 - 2733450
Alignment:
| Q |
16 |
caacacagaaactttacagcaggaaacctagtctgtaaaattatcacgaaccttaatattatcataaaactctctaaaaactttaattcgaatatgatat |
115 |
Q |
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||||| ||||||||| ||||||||||| | || ||||||||||||| ||| |||| |||||||||||| ||||||||||| ||||||| |||||||||| |
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| T |
2733644 |
caacatagaaactttgcagcaggaaacttggttcgtaaaattatcaccaacattaaaattatcataaaattctctaaaaacattaattcaaatatgatat |
2733545 |
T |
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| Q |
116 |
-atcgacatttttaagtttaaaaaatctgaaagaggaattaaaaatgaatgattttaaaataggaggacaaattttgtgactaaatgaaaatagaa |
210 |
Q |
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| T |
2733544 |
gatcgatatttctaagttt-aaaaacctgaaagaggaattaaagctgaatgatcttaaaatgggaggaccaattttgtgattaagtgaatatagaa |
2733450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 40430338 - 40430406
Alignment:
| Q |
122 |
atttttaagtttaaaaaatctgaaagaggaattaaaaatgaatgattttaaaataggaggacaaatttt |
190 |
Q |
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||||||||||| ||||||| ||||| ||||||||||| | |||||||||||||||| ||| |||||| |
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| T |
40430338 |
atttttaagttaaaaaaatatgaaaaaggaattaaaactatgtgattttaaaataggacgaccaatttt |
40430406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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