View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14670_high_5 (Length: 235)
Name: NF14670_high_5
Description: NF14670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14670_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 13407860 - 13408054
Alignment:
| Q |
38 |
gatgaacacacttcctcaatagttataacttataagtaaccatcagtatctatgagttgaaaaattctatgtttggatattattttaagtcattgattct |
137 |
Q |
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| T |
13407860 |
gatgaacacacttcctcaatagttataacttataagtaaccatcagtatctatgagttgaaaaattctatgtttggatattattttaagtcattgattct |
13407959 |
T |
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| Q |
138 |
aagtttgaatattattttgagtaggtagtgactttcacaatttggaaagtgtcatttatttatatgattaatttcaagtagttttaattgatttt |
232 |
Q |
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| T |
13407960 |
aagtttgaatattattttgagtaggtattgactttcacaatttggaaagtgtcatttatttatatgattaatttcaagtagttttaattgatttt |
13408054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 19173868 - 19173774
Alignment:
| Q |
105 |
tatgtttggatattatttt--aagtca-ttgattctaagtttgaatattattttgagtaggtagtgactttcacaatttggaaagtgtcatttat |
196 |
Q |
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| T |
19173868 |
tatgtttggatattattttttaagtcaattgattctaagtttgaatattatttggagcaggtattgactttcacaaattggaaagtgtcatttat |
19173774 |
T |
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