View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14670_high_7 (Length: 227)
Name: NF14670_high_7
Description: NF14670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14670_high_7 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 13395777 - 13395987
Alignment:
| Q |
17 |
atggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
116 |
Q |
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| T |
13395777 |
atggattaatgttgaaagtggacctaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
13395876 |
T |
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| Q |
117 |
ttttcattggtacgaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaa |
216 |
Q |
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| T |
13395877 |
ttttcattggtacgaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaa |
13395976 |
T |
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| Q |
217 |
gctgagaagca |
227 |
Q |
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| T |
13395977 |
gctgagaagca |
13395987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 19174366 - 19174146
Alignment:
| Q |
7 |
gatatccacgatggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttc |
106 |
Q |
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| T |
19174366 |
gatatccacgatggattaatgctgagagtggacctaaagagcctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttc |
19174267 |
T |
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| Q |
107 |
tctcttaccattttcattggtacgaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgt |
206 |
Q |
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| T |
19174266 |
tttgttaccatcttcattgctacgaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgt |
19174167 |
T |
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| Q |
207 |
tgatttggaagctgagaagca |
227 |
Q |
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| T |
19174166 |
tgatttggaagctcagaagca |
19174146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 13407376 - 13407596
Alignment:
| Q |
7 |
gatatccacgatggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttc |
106 |
Q |
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| T |
13407376 |
gatatccacgatggattaatgctgagagtggacgtaaagagcctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttc |
13407475 |
T |
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| Q |
107 |
tctcttaccattttcattggtacgaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgt |
206 |
Q |
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| T |
13407476 |
tttgttaccatcttcattgatacgaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgt |
13407575 |
T |
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| Q |
207 |
tgatttggaagctgagaagca |
227 |
Q |
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| T |
13407576 |
tgatttggaagctcagaagca |
13407596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 13384823 - 13385033
Alignment:
| Q |
17 |
atggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
116 |
Q |
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| T |
13384823 |
atggattaatgttgagagtggagccaaagagcctccatcactatcacatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
13384922 |
T |
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| Q |
117 |
ttttcattggtacgaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaa |
216 |
Q |
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| T |
13384923 |
tcttcattggtacgaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgttgatttggaa |
13385022 |
T |
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| Q |
217 |
gctgagaagca |
227 |
Q |
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| T |
13385023 |
gctcagaagca |
13385033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 70086 - 70117
Alignment:
| Q |
58 |
tatccaatgcaaagtattgaccaattgatgag |
89 |
Q |
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| T |
70086 |
tatccaatgcaaagtattgaccaattgatgag |
70117 |
T |
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