View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14670_low_8 (Length: 216)
Name: NF14670_low_8
Description: NF14670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14670_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 10262251 - 10262074
Alignment:
| Q |
24 |
gaccaaacgtgcatattgcgtaaaaaagaaagtgaaaaccattctcatttattcttcacttgtgagtattgattgtatggaaagatgtaatggagtaaca |
123 |
Q |
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| T |
10262251 |
gaccaaacgtgcatattgcgtaaaaaagaaagtgaaaaccattctcatttattcttcacttgtgagtattgattgtatggaaagatgtaatggagtaaca |
10262152 |
T |
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| Q |
124 |
tgaagattaataccaacaaatgacagacaatgatgtaatatattcaaagtcaggacaatataaacaatcatattcatc |
201 |
Q |
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| T |
10262151 |
tgaagattaataccaacaaatgacaggtaatgatgcaatatattcaaagtcaggacaacataaacaatcatattcatc |
10262074 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 52657497 - 52657428
Alignment:
| Q |
24 |
gaccaaacgtgcatattgcgtaaaaaagaaagtgaaaaccattctcatttattcttcacttgtgagtatt |
93 |
Q |
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| T |
52657497 |
gaccaaacttgcatcttgtgtaaaaaagagaatgaaaatcgttctcatttattctttacttgtgaatatt |
52657428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 52662541 - 52662472
Alignment:
| Q |
24 |
gaccaaacgtgcatattgcgtaaaaaagaaagtgaaaaccattctcatttattcttcacttgtgagtatt |
93 |
Q |
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|||||||| ||||| ||| |||||||||| | | |||| ||||||||| |||||||||||||||| |||| |
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| T |
52662541 |
gaccaaacttgcatcttgtgtaaaaaagagaataaaaatcattctcatctattcttcacttgtgaatatt |
52662472 |
T |
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