View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14672_high_3 (Length: 431)
Name: NF14672_high_3
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14672_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 63 - 417
Target Start/End: Complemental strand, 47965278 - 47964944
Alignment:
| Q |
63 |
tagagagggtaaggtgttttgtttagactcttgcaatttgttatcagccgacaagtgatgtcgaattctgcttatgttgttctcaaaactcagcttgatg |
162 |
Q |
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| T |
47965278 |
tagagagggtgaggtgttttgtttagactcttgcaatttgttatcagccgacaagtgatgtcgaattctggttatgttgttctcaaaactcagcttgatg |
47965179 |
T |
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| Q |
163 |
atgatccctagacaccggtgttccaacaattatatgagagaaaaccttcttccataccatcaattctaaaggtggtgatgtgtgtgacaaacagtaatat |
262 |
Q |
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| T |
47965178 |
atgatcccgagacaccggtgttccaacaattacatgaga--------------------tcaattctaaaggtggtgatgtgtgtgacaaacattaatat |
47965099 |
T |
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| Q |
263 |
atttttattgaatttcaatttaaaacaacgcatatacatttagaacaaatagaaacataaatagtaaaaactttaacacgaaaaatctaataattttaaa |
362 |
Q |
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| T |
47965098 |
atttttattgaatttcaatttaaaacaacgcatatacatttagaacaaatagaaacataaatagtaaaaactttaacacgaaaaatctaataattttaaa |
47964999 |
T |
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| Q |
363 |
catttccctgtttctcctgcaaaagttattattcactttgcaactttggatacat |
417 |
Q |
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| T |
47964998 |
catttccctgtttctcctgcaaaagttattattcacttttcaactttggatacat |
47964944 |
T |
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