View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14672_high_4 (Length: 427)
Name: NF14672_high_4
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14672_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 63 - 408
Target Start/End: Original strand, 25374868 - 25375197
Alignment:
| Q |
63 |
acataactcgctaacatttgccatctgaaaagnnnnnnnnncagttgatataatgcagtttagagtgaaggagcaagttttacaaactatgactagaagc |
162 |
Q |
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| T |
25374868 |
acataactcgctaacatttgccatctgaaaagaaaaaaaa-cagttgatataatgcagtttagagtgaag-agcaagttttacaaactatgactagaagc |
25374965 |
T |
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| Q |
163 |
ttactaaatccagggaagcaatgcaggaagagtcagaatcttcattctgtgaatcaatgcttatgcttcttgttgaattggtgagtaaaagccaaaggtg |
262 |
Q |
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| T |
25374966 |
ttactaaatccagggaaggaatgcaggaagagtcagaatcttcattctgtgaatcaatg--------tcttgttgaattggtgagtaaaag------gtg |
25375051 |
T |
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| Q |
263 |
ataaaatcatgtgaggtttgttgcaaattgcaatgcactttgctacatgttggtggaggaaatctaaaactgaaaaagatagatgaaaggagagtgttga |
362 |
Q |
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| T |
25375052 |
ataaaatcatgtgaggtttgttgcaaattgcaatgcactttgctacatgttggtggaggaaatctaaaactgaaaaagatagatgaaaggagagtgttga |
25375151 |
T |
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| Q |
363 |
aaggtggttgcaatgcagacaagaacatgagaatcaaagatagacg |
408 |
Q |
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| T |
25375152 |
aaggtggttgcaatgcagacaagaacatgagaatcaaagatagacg |
25375197 |
T |
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