View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14672_low_1 (Length: 643)

Name: NF14672_low_1
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14672_low_1
NF14672_low_1
[»] chr7 (5 HSPs)
chr7 (16-383)||(3753085-3753452)
chr7 (415-627)||(3752841-3753053)
chr7 (16-383)||(4046786-4047153)
chr7 (415-627)||(4047185-4047397)
chr7 (510-622)||(9664318-9664430)
[»] chr6 (11 HSPs)
chr6 (492-592)||(6458406-6458506)
chr6 (502-622)||(6506526-6506646)
chr6 (502-629)||(6466373-6466500)
chr6 (483-622)||(6529220-6529359)
chr6 (502-622)||(6472058-6472178)
chr6 (502-606)||(6519604-6519708)
chr6 (510-622)||(6497721-6497833)
chr6 (514-604)||(6460857-6460947)
chr6 (514-622)||(6515107-6515215)
chr6 (510-604)||(7204144-7204239)
chr6 (510-604)||(7238895-7238990)
[»] chr4 (1 HSPs)
chr4 (510-622)||(13535342-13535454)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 3753452 - 3753085
Alignment:
Q  16 cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3753452 cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggaaaatggattggatac 3753353  T
Q  116 aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753352 aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg 3753253  T
Q  216 tcgaaagaagacaaagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3753252 tcgaaagaagacaaagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttataaaagggcttcctctaactaaaa 3753153  T
Q  316 agaatcttagatttgaagagggaatgtcgagagtcacaccaagatcactataggatgagataacatgg 383  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  3753152 agaatcttagatttgaagagggaatgtcaagagtcacaccaagatcactatatgatgagataacatgg 3753085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 415 - 627
Target Start/End: Complemental strand, 3753053 - 3752841
Alignment:
Q  415 aggaagaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaaaagagaagaagagggtaggaaatagagagggaaaagtttgaggattt 514  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3753053 aggatgaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaaaagaggagaagagggtaggaaatagagagggaaaagtttgaggattt 3752954  T
Q  515 gatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttgt 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752953 gatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttgt 3752854  T
Q  615 gagaagaagtttg 627  Q
    |||||||||||||    
T  3752853 gagaagaagtttg 3752841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 4046786 - 4047153
Alignment:
Q  16 cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatac 115  Q
    |||||| ||||||||||||||| |||||||||||||||||||||   |||| || |||||  ||   |||||| || ||||||| |||||||  ||||      
T  4046786 cagagatagggtaacaagagctaaatttatcaagaattttctcaccattggaatcaggaacaaccgcgatacgaataataccggaaaatggaccggattt 4046885  T
Q  116 aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg 215  Q
    || ||| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||| |      
T  4046886 aacctcggaaccatcatggttgaagttgattggtgaagaagtgtatatgatccatgtctgattgttattgagttgaagggtatatttggtttttttctta 4046985  T
Q  216 tcgaaagaagacaaagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaa 315  Q
    || || | ||||||||||| |||  |||||| ||||||||||||||| |   |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  4046986 tcaaatggagacaaagaaattatactatgaattgttgtgattgaaagaggtattggttttgtaactgaagcagttaaaaaagggcttcctctaaccaaaa 4047085  T
Q  316 agaatcttagatttgaagagggaatgtcgagagtcacaccaagatcactataggatgagataacatgg 383  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||    
T  4047086 agaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactataagatgaaataacatgg 4047153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 415 - 627
Target Start/End: Original strand, 4047185 - 4047397
Alignment:
Q  415 aggaagaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaaaagagaagaagagggtaggaaatagagagggaaaagtttgaggattt 514  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||| ||| |||||| |||||||||||||    
T  4047185 aggaagatattgtaagatctggtgaaaaaacttggtacaacattgctgttgaaaagaggagaagagggtatgaaacagatagggaagagtttgaggattt 4047284  T
Q  515 gatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttgt 614  Q
    ||  ||||||||||||||||||||| ||   |||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||    
T  4047285 gacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagtttgtagggagaggtgtggatagtaagttttgt 4047384  T
Q  615 gagaagaagtttg 627  Q
    |||||||| ||||    
T  4047385 gagaagaaatttg 4047397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 510 - 622
Target Start/End: Complemental strand, 9664430 - 9664318
Alignment:
Q  510 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 609  Q
    ||||||| ||| ||||||||||||||||||  |  ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  9664430 gatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtagatagaagat 9664331  T
Q  610 tttgtgagaagaa 622  Q
    || | ||||||||    
T  9664330 ttggagagaagaa 9664318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 492 - 592
Target Start/End: Original strand, 6458406 - 6458506
Alignment:
Q  492 gagagggaaaagtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtaggga 591  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||||    
T  6458406 gagagggagaagtttgaggatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttggga 6458505  T
Q  592 g 592  Q
    |    
T  6458506 g 6458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 502 - 622
Target Start/End: Original strand, 6506526 - 6506646
Alignment:
Q  502 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 601  Q
    ||||||| ||||||||||||||||| |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  6506526 agtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagtttgtaggcaggggtgtgga 6506625  T
Q  602 tagtaggttttgtgagaagaa 622  Q
    ||| || ||| | ||||||||    
T  6506626 tagcagatttggagagaagaa 6506646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 502 - 629
Target Start/End: Original strand, 6466373 - 6466500
Alignment:
Q  502 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 601  Q
    ||||||| ||||||||||| || || |||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  6466373 agtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtggggaggggtgtgga 6466472  T
Q  602 tagtaggttttgtgagaagaagtttgtg 629  Q
    ||| || ||| | |||||||||||||||    
T  6466473 tagcagatttggagagaagaagtttgtg 6466500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 483 - 622
Target Start/End: Original strand, 6529220 - 6529359
Alignment:
Q  483 taggaaatagagagggaaaagtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagt 582  Q
    ||||||||||| || ||  ||| ||| ||||||||||| || || |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  6529220 taggaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaagagt 6529319  T
Q  583 ttgtagggaggggtgtggatagtaggttttgtgagaagaa 622  Q
    |||||||||||||||||||||| || ||| | ||||||||    
T  6529320 ttgtagggaggggtgtggatagcagatttggagagaagaa 6529359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 502 - 622
Target Start/End: Complemental strand, 6472178 - 6472058
Alignment:
Q  502 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 601  Q
    ||||||| ||||||||||||||||| |||||||||||||||  ||||||||| |  || |||| ||||||||||||||||||||||||||||||||||||    
T  6472178 agtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttgtagggaggggtgtgga 6472079  T
Q  602 tagtaggttttgtgagaagaa 622  Q
    ||| |  ||| ||||||||||    
T  6472078 tagcaaatttggtgagaagaa 6472058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 502 - 606
Target Start/End: Complemental strand, 6519708 - 6519604
Alignment:
Q  502 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 601  Q
    ||||||| ||||| |||||||| || ||||| |||||||||  |||||| || | |||||||||||||||||||||||||||||||||||||||| ||||    
T  6519708 agtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtagggaggggtttgga 6519609  T
Q  602 tagta 606  Q
    |||||    
T  6519608 tagta 6519604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 510 - 622
Target Start/End: Original strand, 6497721 - 6497833
Alignment:
Q  510 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 609  Q
    ||||||||||||||||| ||||  |||||||||  |||||| |||| |||||||||||||||||||||||||||||| ||||||||| | ||||| || |    
T  6497721 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagat 6497820  T
Q  610 tttgtgagaagaa 622  Q
    |||  ||||||||    
T  6497821 ttttagagaagaa 6497833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 514 - 604
Target Start/End: Complemental strand, 6460947 - 6460857
Alignment:
Q  514 tgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatag 604  Q
    ||||||||||||| |||| |||||| |||  ||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  6460947 tgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggagtttgtagggagtggtttggatag 6460857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 622
Target Start/End: Complemental strand, 6515215 - 6515107
Alignment:
Q  514 tgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttg 613  Q
    ||||||||||||| || |||||||||||||| ||||| |    ||||  |||||||||||||||||||||||| ||||||||||| ||||| || ||| |    
T  6515215 tgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaagaaagagtttgtggggaggggtgtagatagaagatttgg 6515116  T
Q  614 tgagaagaa 622  Q
     ||||||||    
T  6515115 ggagaagaa 6515107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 604
Target Start/End: Complemental strand, 7204239 - 7204144
Alignment:
Q  510 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtaggga-ggggtgtggatag 604  Q
    ||||| |||||||| || |||||||||||||||  ||||||||||  ||||||||||||||||||||||||  | || |||| |||||||||||||    
T  7204239 gatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 604
Target Start/End: Complemental strand, 7238990 - 7238895
Alignment:
Q  510 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtaggga-ggggtgtggatag 604  Q
    ||||| |||||||| || |||||||||||||||  ||||||||||  ||||||||||||||||||||||||  | || |||| |||||||||||||    
T  7238990 gatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 510 - 622
Target Start/End: Complemental strand, 13535454 - 13535342
Alignment:
Q  510 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 609  Q
    ||||||| ||| ||||||||||||||||||  |  ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  13535454 gatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtagatagaagat 13535355  T
Q  610 tttgtgagaagaa 622  Q
    || | ||||||||    
T  13535354 ttggagagaagaa 13535342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University