View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14672_low_2 (Length: 432)
Name: NF14672_low_2
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14672_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 40811626 - 40811229
Alignment:
| Q |
17 |
agtttgaagtcatagagataatag--taccaacaaacaacactgagtaagcagagatctctgcaccagtggtaatgggtccttgtgcttaccgtacctca |
114 |
Q |
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| T |
40811626 |
agtttgaagtcatagagataatagagtaccaacaaacaacactgagtaagcagagatctctgcaccagtggtaatgggtccttgtgcttaccgtacctca |
40811527 |
T |
|
| Q |
115 |
tatcatatcatatcatatatctattttccactaccatcaccacaagcacatgcattgttgcatctgcatgtttgacaactccactaaattataaatcaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40811526 |
tatcatatcatatcatatatctattttccactaccatcaccacaggcacatgcattgttgcatctgcatgtttgacaactccactaaattataaatcaac |
40811427 |
T |
|
| Q |
215 |
ataaaaacattttactacatttttgctggattctttctgggtacaaagcaaaatagaatgcgtgatttaa-ttttttataaattttaagttacgtagtag |
313 |
Q |
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|||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40811426 |
ataaaaacattt---tacatttttgctggattctttctgagaacaaagcaaaatagaatgcgtgatttaatttttttataaattttaagttacgtagtag |
40811330 |
T |
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| Q |
314 |
tactattaattattgttgttgttgcttctggttactactagttagtattgatgtttggtaccttaaaccgtaacattcacgtgtactatatatattgttt |
413 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40811329 |
tact----attattgttgttgttgcttctggttactactagttagtattgatgtttggtaccttaaaccgtaacattcacgtgtactatatatattgttt |
40811234 |
T |
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