View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14672_low_5 (Length: 413)
Name: NF14672_low_5
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14672_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 40330072 - 40329800
Alignment:
| Q |
17 |
attagaacataaatattgatataagtagctaacatatatcatcatcaatacatacaatacatagattacaacttaccagaagaaaattgagttccttatt |
116 |
Q |
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| T |
40330072 |
attagaacataaatattgatataagtagctaacatatatcatcatcaatacatacaatacatagattaccacttaccagaagaaaattgagttccttatt |
40329973 |
T |
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| Q |
117 |
ttcatcctccaagatttttccctgagtaatatcaaaggaatcacatgagttaattaagcnnnnnnnnnnnnggaattacatgagcattttcatgttaaaa |
216 |
Q |
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| T |
40329972 |
ttcatcctccaagatttttccctgagtaatatcaaaggaatcacatgag----ttaagcaaaaataaaaaaggaattacatgagcattttcatgttaaaa |
40329877 |
T |
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| Q |
217 |
gagtaattagatgagttagcatcccttttgattacttttcaagggatttatgttttgttagacatataattactgcc |
293 |
Q |
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| T |
40329876 |
gagtaattagatgagttagcatcccttttgattacttttcaagggatttatgttttgttagacatataattactgcc |
40329800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 40329729 - 40329689
Alignment:
| Q |
366 |
tacatacatttctcttgaacatcctatgcacttccatctgt |
406 |
Q |
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| T |
40329729 |
tacatacatttctcttgaacatcctatgcacttccatctgt |
40329689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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